Gene Dfer_4011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4011 
Symbol 
ID8227607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4862576 
End bp4863286 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content50% 
IMG OID644931853 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_003088380 
Protein GI255037759 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0268606 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACTG CTAAATCTGC AAACTCGGCT CCGAAAGTAC TGGTAGTTGA CGACGATTCC 
GACATTGTTG AACTTCTCGA ATATAACTTA ACCAAGGAAG GCTATTCGGT ACTGACCGCC
TCCAACGGAA AGAAGGCTAT CGACATCGCC AAGGCATTCG TACCCGATCT CATCCTCCTC
GACATCATGA TGCCCCAACT CGACGGCATC GAAACCGGCA GGATATTGCG CCAGAATCCC
GACATCAAGA ACACCTATAT CCTGTTTCTG ACCGCGCGCT CCGAGGAATA TTCGGAAGTA
GCTGCGTTTG AAGTAGGTGC CGACGATTAC ATCACCAAGC CGATCAAGCC GCGTGCGCTC
ATGAGCCGGA TCAATGCATT GTTCCGTCGC GAAGCCCAGA AAGCGGAGTC GGGCGATACG
ATCGAGATCC TCGATTTGTC CATTAACCGC AAGAACTATA CGGTAACCCA GGGCGGCGAG
AAGTCGACTG TTTTGCCTAA AAAAGAATTC GAACTGCTGT TTTTCCTGGC ACAAACGCCG
AACAAGGTTT TCAGCCGCGA CGAATTGCTG CAAAAGATCT GGGGGGCAGA TATTTATGTG
CTCGAAAGGA CCGTGGATGT CCATATTCGC AAACTGCGCG AAAAGCTGGG CGATACTTAT
ATCAAAACTT TGAAGGGCGT AGGCTATATG TTCAGCAACG AGCGCGAATA A
 
Protein sequence
MSTAKSANSA PKVLVVDDDS DIVELLEYNL TKEGYSVLTA SNGKKAIDIA KAFVPDLILL 
DIMMPQLDGI ETGRILRQNP DIKNTYILFL TARSEEYSEV AAFEVGADDY ITKPIKPRAL
MSRINALFRR EAQKAESGDT IEILDLSINR KNYTVTQGGE KSTVLPKKEF ELLFFLAQTP
NKVFSRDELL QKIWGADIYV LERTVDVHIR KLREKLGDTY IKTLKGVGYM FSNERE