Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3895 |
Symbol | |
ID | 8227490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 4738145 |
End bp | 4739290 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644931736 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_003088264 |
Protein GI | 255037643 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACCA GACCGCACAC CTGCACATTC AGGCCGGAAG ACCTCCTCGG CCGCTCCCCC ATCGTACTCG ACCGTGATAA TATCATCCGG GAAATCAAAG GCCGCTCCGT CCTCATCACC GGCGCCGCCG GGACGATCGG CAGCGAACTT GCCGCGCAGG TCTGCGCATG TGCGCCCGCA AGGCTGGTGC TCGTGGATCA GGCAGAAAGC CCATTGCACG ACCTCGACCT TTTACTGACT GAACAATATC CTCAAACCGA CATTAACACC TGCATCGGCA GCATTACCGA TGCGCTGCGG ATGTCTGACA TTTTCGCGCA TTCGAAGGTC GACACCGTGC TGCACGCCGC TGCCTACAAG CATGTCCCAC TGATGGAGCG ACATCCTTAC GAGGTGATCA AAACGAATGT TTTCGGTACC AAAATACTGG CTGACCTGGC AGTATCGCAT GGCGTGGGCA AGTTTGTTTA CATTTCAACC GACAAAGCCA TCAAGCCCGC CAGCGTGATG GGTGCCACCA AACGCTTTGC CGAAATATAC CTTCAAAACC TGGCTAACAG ATTTCCCGAC CGGACGCGGT TCATCATCAC ACGTTTTGGA AATGTACTGG GCTCCAATGG CTCGTTTCTG CTCCGTTTTG CACAACAAAT CCGCGAAGGC GGACCGATCA CCGTCACACA TCCGCACGCC GAGCGGTACA TGATGACCGT CACCGAAGCC TGCCAGCTCG TGCTGGCAGC CGCAGCGATC AGTAACGGCC ACGAAATTCT CTCCTTCGAC ATGGGTGAGC CTGTGCGCGT AGCCGACATG GCCAAACGGA TGATCGAGCT TGCGGGCTTA GGGCCGGGGA CGGATATCCA AATCCGCTTT ACCGGCTTGC GACCGGGTGA AAAGTTATCG GAAGAGCCGC CTTCCGGCCC GGCCTGCGCG AGGGGGAAAA TCCAAAGCAC CGCCTTCTCC GGCGACGCCG CCTCGTGGAT GCAGCAATGG CTGCCCGCAT TGCAGAATGC GCTCACATCC TGCGAGCCCG AACGAATGGT AAGCATTCTC AAATCGGCAA TCCCCGAGTA CATCAGCGCC AATTCGCCAT TTGCACGGCT TGATGTGCTG CGCCAAGCAT CCGAGGCCGT GGCACCGGCC GTTTGA
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Protein sequence | MQTRPHTCTF RPEDLLGRSP IVLDRDNIIR EIKGRSVLIT GAAGTIGSEL AAQVCACAPA RLVLVDQAES PLHDLDLLLT EQYPQTDINT CIGSITDALR MSDIFAHSKV DTVLHAAAYK HVPLMERHPY EVIKTNVFGT KILADLAVSH GVGKFVYIST DKAIKPASVM GATKRFAEIY LQNLANRFPD RTRFIITRFG NVLGSNGSFL LRFAQQIREG GPITVTHPHA ERYMMTVTEA CQLVLAAAAI SNGHEILSFD MGEPVRVADM AKRMIELAGL GPGTDIQIRF TGLRPGEKLS EEPPSGPACA RGKIQSTAFS GDAASWMQQW LPALQNALTS CEPERMVSIL KSAIPEYISA NSPFARLDVL RQASEAVAPA V
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