| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3788 |
|---|
| Symbol | |
|---|
| ID | 8227374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4608618 |
|---|
| End bp | 4610885 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644931620 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_003088157 |
|---|
| Protein GI | 255037536 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACCACA ACGATTATCT ATCGACCTTG AATGAGCCTC AACGGGAGGC TGTGCTGCAC
GGAAATGGCC CTTTGATGAT CATTGCGGGC GCGGGTTCGG GGAAAACGAG GGTACTTACC
TACCGCATTG CGCGGCTGAT CGAGACGGGT GTCGACCCAT TCCGCATTTT GTCCCTGACA
TTTACCAATA AAGCATCCGG CGAAATGCGC AGCCGCATCG AAGGCGCCGT CGGTACCGAG
GCGCGGAACA TCTGGATGGG TACTTTTCAC TCCGTTTTCG CCAAGATACT GCGCATCGAA
GCCCGCTACC TGGGCTATAC CAGCGATTTC TCTATTTATG ATACCGACGA TTCGAAGTCG
TTACTGAGAA GTATTATCAA AGAATATAAC CTCGACGACA AGGTTTATAA GGCCAATGTA
GTTTTCAACC GGATCTCCGG AGCGAAGAAC CGGCTCATTT CGGCAGACGA CTACATTAAT
AATGCAATCA TCCAGCAGGA CGATGAAGCG GCGAAGATGA AGGAAATCGG CAGGCTGTAC
AAAACGTACG CGACGCGCTG TTTCCAGGCC AATGCCATGG ATTTCGACGA CCTGCTTTTC
AATACCAACG TCCTTTTCCG CGATTTTCCC GACGTATTAT ATAAGTACCA GCACAAGTTT
CAGCATGTGA TGGTGGATGA GTTTCAGGAT ACGAACGTAT CTCAATATCT CATTACCAGG
AAATTATCCG CTGTGCACCG GAATATCGTC GTCGTGGGTG ACGATGCGCA GAGTATATAC
GCATTCCGCG GCGCGAACAT CGAGAATATC CTCAATTTTG AAAAGGACTT CCCGGATGTG
CGCGTGATCA AGCTGGAACA GAATTACCGC TCGACCAGCA CGATCGTGAA TGCAGCCAAT
TCGGTGATCG CCCGCAACAA GTCGCAGCTC GAAAAACATA CATTTACTTC CAACGAAGAA
GGTTCGCTGA TCGACGTGAT CAAGGCGGGT TCGGACAATG AGGAAGGCCG CCTCATCGCG
ACGGCGATTT TTGAAGAAAA AATGCAGAAA GCGCTGCGTA ATGAGCATTT CGCCATTTTG
TACCGCACCA ATGCACAGTC GCGCTCATTT GAAGAAGCGC TCCGGAAGCT CGGCATTAAG
TACCGCATTG TTGGTGGCCA GTCATTTTAC CAAAGGAAAG AAATCAAGGA TTTGCTTGCT
TACCTGCGGT TTACAGTGAA CCAGCGGGAC GAAGAAGCTT TCAAACGGAT TATTAATTTA
CCCAAAAGAG GCATCGGCGA CACCACCGTG GCCAAAATCG CGGTGACTGC TTCCGAAAAC
AATGTGGCGA TCTGGGATGT GGTGGCCAAT ATCAATCAAT ATGGTACCGG TCGCACTATC
GCACCCATCG AAGGCTTTGG GACGCTGATC AAGAGTTTCA AAATTTTGGT CGAAGAAGGC
AAGGACGCCT ATGAAATTTC TTCCCACATT GCCAAAGCAT CCGGCATTTT GCGTGAATTG
TATGAAGATA AGACCGTGGA AGGCCTTTCG CGCTACGAAA ACGTGCAGGA ATTGCTGAAC
GGGATCAAGG AATTTGTCGA TAGCGATGAA ACGGAGGATA AATCATTGAG TGCGTTCCTT
CAATCGGTGT CGCTGTTGAC GAATGCGGAT GAGCCGGATG ATAATAATGA CCACGACCGG
GTGACGATGA TGACCATTCA CTCGGCTAAG GGTCTGGAAT TCAGGAATGT ATTTATTGTG
GGCCTGGAAG AAGACCTTTT CCCGAGCCAG ATGATGCTCG AAAGCCGGCA AGATTTGGAA
GAAGAAAGGA GGCTTTTCTA CGTGGCGATC ACGCGTGCGG AAAAGAAGCT CTCATTCTCC
TACGCCGAGA GCCGTTACCA GTGGGGCCGC CTGAAAATGT GCGAGCCGAG CCGGTTCCTG
CTCGAAGTGG AACAGAAGTA TTTGAACGTG AATAAAATGG TGCAAAGTGC CCTCGAACGC
GACACGACGC CTCCTGTGAC GACATTTGCC CGCAACCTGG TGCAGCGCAA AACAGAGGCC
AAACCGGCAG TAACCGCCGC GACAAGCCAC GTTCCTTCGG CCGATTTCGT GCCTACCGAC
ACGTTCGATC TGGCGGAAGG CGACAAGGTG GAGCATTTGA AATTCGGTTT CGGGGTGGTG
ACCAAAATGG ACGTCAATGG TACCGACCGG AAAGCGACCG TCAAATTCGA TCTCGTCGGT
GAAAAAACGC TGCTCCTTAG CTTTGCAAAA CTTCGGGTGA TGAAATAA
|
|---|
| Protein sequence | MNHNDYLSTL NEPQREAVLH GNGPLMIIAG AGSGKTRVLT YRIARLIETG VDPFRILSLT
FTNKASGEMR SRIEGAVGTE ARNIWMGTFH SVFAKILRIE ARYLGYTSDF SIYDTDDSKS
LLRSIIKEYN LDDKVYKANV VFNRISGAKN RLISADDYIN NAIIQQDDEA AKMKEIGRLY
KTYATRCFQA NAMDFDDLLF NTNVLFRDFP DVLYKYQHKF QHVMVDEFQD TNVSQYLITR
KLSAVHRNIV VVGDDAQSIY AFRGANIENI LNFEKDFPDV RVIKLEQNYR STSTIVNAAN
SVIARNKSQL EKHTFTSNEE GSLIDVIKAG SDNEEGRLIA TAIFEEKMQK ALRNEHFAIL
YRTNAQSRSF EEALRKLGIK YRIVGGQSFY QRKEIKDLLA YLRFTVNQRD EEAFKRIINL
PKRGIGDTTV AKIAVTASEN NVAIWDVVAN INQYGTGRTI APIEGFGTLI KSFKILVEEG
KDAYEISSHI AKASGILREL YEDKTVEGLS RYENVQELLN GIKEFVDSDE TEDKSLSAFL
QSVSLLTNAD EPDDNNDHDR VTMMTIHSAK GLEFRNVFIV GLEEDLFPSQ MMLESRQDLE
EERRLFYVAI TRAEKKLSFS YAESRYQWGR LKMCEPSRFL LEVEQKYLNV NKMVQSALER
DTTPPVTTFA RNLVQRKTEA KPAVTAATSH VPSADFVPTD TFDLAEGDKV EHLKFGFGVV
TKMDVNGTDR KATVKFDLVG EKTLLLSFAK LRVMK
|
|---|
| |