Gene Dfer_3635 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3635 
Symbol 
ID8227220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4432017 
End bp4432814 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content53% 
IMG OID644931467 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_003088005 
Protein GI255037384 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.655904 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAAAC TTCTTAAATT AGTAATTGTA GCAAGTTTTC TGCTGACCAG CGTCGCCTTT 
GTCTTTCAGC AAGAACCGGT TACTACGAAA TCGGGAAGCA AGGTTAGTAC AGTTGTAATC
GACGCCGGCC ACGGCGGCAA AGACCCCGGC ACCCGGGGCA GGCACACCAA AGAAAAAGAC
GTCGCGCTCA AAGTAGCGCT CGAACTCGGC AGGAAGATCA AAGAGGAAAC GCCGGATGTG
AAAGTGCTCT ACACGCGCTC TACCGACGTT TTCATCGAAT TGGGCGAGCG CTCGGCTTTC
GCCAACCGCA ACAATGCCGA TCTCTTCATT TCCATCCATT GCAACGCCAC GCCGCGTTCG
CGCACGGTGC GGGGAACCGA GACCTTCGTG ATGGGTTTGC ACAAAACCGA GGGTAACCTC
GAAGTCGCGA AACGCGAAAA CTCGGTAATC TTGCAGGAAA CCAACTACAA GCAGAAATAC
AAGGGCTTCG ACCCCGATTC GCCGCTGGCG CACATTATGC TTGCCAACTA CCAAAGTGCA
TTCATTTCCA GCAGCTTGCG GTTCGCCGAT CTCATCGAAA GGAAATTCCA GTCCATTTCG
GAACGCGATA GCCGCGGGGT AAAACAGGCC GGGTTCCTCG TGCTGTGGCG CTGTGCCATG
CCTAGCGTGC TCATCGAAAC AGGCTTTTTG TCATCACCCG ACGAGGAGGA TTACCTCAGC
TCCGATGAAG GCCAGGAGGA GGTCGCCAAA TGCATTCACT CCGCGTTTAT GGCATATAAA
AAAGATATGG ACCGGTAG
 
Protein sequence
MLKLLKLVIV ASFLLTSVAF VFQQEPVTTK SGSKVSTVVI DAGHGGKDPG TRGRHTKEKD 
VALKVALELG RKIKEETPDV KVLYTRSTDV FIELGERSAF ANRNNADLFI SIHCNATPRS
RTVRGTETFV MGLHKTEGNL EVAKRENSVI LQETNYKQKY KGFDPDSPLA HIMLANYQSA
FISSSLRFAD LIERKFQSIS ERDSRGVKQA GFLVLWRCAM PSVLIETGFL SSPDEEDYLS
SDEGQEEVAK CIHSAFMAYK KDMDR