Gene Dfer_3540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3540 
Symbol 
ID8227125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4323863 
End bp4325218 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content50% 
IMG OID644931375 
Productadenylosuccinate lyase 
Protein accessionYP_003087913 
Protein GI255037292 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0015] Adenylosuccinate lyase 
TIGRFAM ID[TIGR00928] adenylosuccinate lyase 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATTAA ATCAGCTTAC GGCGATCTCT CCGGTTGATG GCCGTTATTA CAAACAAGTA 
TCTGAACTTT CGGCCTATTT CTCGGAATAT GCCCTGATTT ATTACCGGGT GTATGTTGAA
ATCGAATATT TCATCGCACT CTGCGAAATC CCCCTCCCGC AACTATCGGA ATTTGACAAG
AAAAAATATG CGTCGCTGCG CAAAATCTAT GAGGATTTCA GCGAAGCCGA TGCATTGCAT
ATAAAGGACA TTGAAAAGGT GACCAACCAC GATGTGAAGG CCGTAGAATA CTTCATCAAG
GAGCAATTCG AGAAGCTGGG CATCGAGTCT TTTCAGGAAT TTATCCACTT TGGACTTACC
TCGCAAGACA TCAACAACAC GGCTATCCCG CTGTCGCTGA AAGACGCGAT GGAGCGCCAG
ATCAAGCCGC TGTTCCGCCA GGTGCTTTTT GTGTTGAAAC GCATGTCGAT CGAGTGGAAA
AACGTGCCGA TGCTCGCATT CACCCACGGG CAGCCCGCAT CACCTACACG CGTAGGAAAG
GAGTTCCTGG TTTTTGTGGA ACGATTGGAA CGCCAGCTCG AAATGCTCGA CAAAATCCCG
CATTCGGCTA AGTTCGGCGG TGCTACCGGT AACTTCAATG CCCACCATGT CGCTTATCCG
AAACAGGACT GGATGGCTTT CGGCCACCAT TTTGTGGAAG GTTTGGGATT AAAAAGAAGC
CGCCACACGA CGCAAATTGA GCATTACGAC AATATTGCAG CGATGTTCGA CTGCCTGAAA
CGCCTGAACA CGATCCTGAT CGACCTTAAT CGTGATATGT GGACGTACAT TTCAATGGGG
TATTTCAAGC AGAAGATCAA AGCCGGCGAA GTAGGATCTT CGGCGATGCC GCACAAAGTG
AATCCGATCG ACTTCGAAAA TTCGGAAGGA AACCTGGGGC TGGCATCTGC ATTATTCGAG
CATTTTGCCG CGAAATTGCC CATTTCCCGC CTGCAACGCG ACCTTACCGA CTCCACGGTA
CTCCGCAACA TCGGCGTCCC CGTCGCGCAT TTGGCTATCG CCCTGAACTC GCTGCTGAAA
GGCCTGGGCA AAGTGGAACT GAATGGTGAA GTACTGAAAG CCGAACTGGA AGAAAACTGG
GCGGTAGTGT CCGAGGCGAT CCAAACGATC CTGCGCCGCG AAAGCTACCC AAAACCGTAC
GAGGCATTGA AAGAGCTGAC CCGCACCAAC GAAAAAATCA CCCACGATTC CATCTCACGT
TTCATCGAAA CGCTGGACGT GTCCGAAAAA ATAAGAGAAG AACTCCGCGC CCTGAGCCCG
TTCAATTATT TGGGCGTTGT GGAGGATACG TTTTAA
 
Protein sequence
MSLNQLTAIS PVDGRYYKQV SELSAYFSEY ALIYYRVYVE IEYFIALCEI PLPQLSEFDK 
KKYASLRKIY EDFSEADALH IKDIEKVTNH DVKAVEYFIK EQFEKLGIES FQEFIHFGLT
SQDINNTAIP LSLKDAMERQ IKPLFRQVLF VLKRMSIEWK NVPMLAFTHG QPASPTRVGK
EFLVFVERLE RQLEMLDKIP HSAKFGGATG NFNAHHVAYP KQDWMAFGHH FVEGLGLKRS
RHTTQIEHYD NIAAMFDCLK RLNTILIDLN RDMWTYISMG YFKQKIKAGE VGSSAMPHKV
NPIDFENSEG NLGLASALFE HFAAKLPISR LQRDLTDSTV LRNIGVPVAH LAIALNSLLK
GLGKVELNGE VLKAELEENW AVVSEAIQTI LRRESYPKPY EALKELTRTN EKITHDSISR
FIETLDVSEK IREELRALSP FNYLGVVEDT F