| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3440 |
|---|
| Symbol | |
|---|
| ID | 8227020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4205222 |
|---|
| End bp | 4209541 |
|---|
| Gene Length | 4320 bp |
|---|
| Protein Length | 1439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644931272 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003087815 |
|---|
| Protein GI | 255037194 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGAC CCTTTACCTG CGTCTTCCTT TTCTGGCTGG CCATTTCCGG CGTATTGGCT
CAGAATGCAT CCATTTCCAT TACCGATTCT CCCGCCGCAT GCCTCCGAAC GAAGCATAGC
ATTCCGGTAA AGCTCACCGG GTTGTTTCAG GCGGGCAACC AGTTTTGGGT GCAGATCAAA
ACAAGCGCTG CGGCTCAAAG TTATTCACAA TATGCCGGCA CTTTGAAAAA CGGCGCCATT
GAAGTCACAT TTTCCGATTC TGCGCTGGTT TCGCATCCCA CGCTCTGGAT TCGGATTGCC
GCCACGGCAC CGGCTGTGGA AAGCAATTGG CAGGAAAACT TCCGCGTGCA CGGCAAGGGA
ATTATTACCA TATCACCACT CCTGTCCGAC ACCCTGAATA AGTATGACGA GCACCGTTTT
CAGACGCAGA CGATCAGTTC ATCCGACGGA ACGGGCGTGC TGAATGACAG TACCAGCGTG
CGCATTTACG GTAGCCACAT CGGGCCCACC TCGCCGCAGC TGGATGCTAA AATGGTTGAG
AAAACCACTG ACTTTACCAT TGCCCATGCC GAAAACTACT GCGGCCCCAT GCAAACGAAA
GGGGTTTCCC GGGCTGTGGT GAATGCGGTT TCGCTGGTTA CAACGCTGGT ATCACCGTCG
ACCATTTGCG CAGGGAATAC CATATCAGTT CAGTTTTCGG GCGACGGACC GTTGCCGGCG
GCCACTTCGG GCTGGAAAGT AAGGTTACGG GAGGCCATTT ACACCGGCGA CGACAAGCCC
GGCGGCAGAA CGATGGAGTT GCCGGCGAAG CGCACTTCGG ACAATACGCT CGAAATCACC
GTCCCTGCAT CATTCACACC CGAATTCAAT ACTCCATTAA ACATCCGCGT CCTTTCGCCG
GGCGGGGGCA TTGTTGGCGG TCGGGGTAAA GTGTTGTTGC AGATGCAGAC GCCGCCGCAG
GTTTCATTTG CGAAAACCGC ATACACGGTC GCATTCGGCG AGGCGGTTTT GTTGCAAATA
CAAAAGACCG GGACAGCACC ATTTCGGGTG AAGTTTAGCG ATGGAAGGGA CTATTTCGAT
GGCGCGAGCA CTCAATTCGA CGAAAGCAAC CCATTGTATA AAAAGCCTTT ACAAACCACT
ACTTATTCGA TTCAATCGGT GAGTTCGGGT TGCGGGGTGC ACACACCGTC GCCCGCTCCG
TCGGCAAAGG TGACAGTACT GCCGGGAATG CTGCTCGACG ACCTGAATCC GGCGAAGCCA
TTTTGTGAGC AGCAGACTGC CCGGCTGCAT TTCGTTTCCA GCGAGCCTAT TCCGTCTTCC
AGCGCGCTTT CAATGGAGAT CAGGCATCAA AACGGAGAGA TCAAAACGCT TCCGGTAACC
AGGGATGGCG AATTTGTATC CTTTAAAATC CCTGTTTTTG CTGATTACAA TACGGAATAT
CCACGCGTCC GGGCCCGGTT TACATTCACG CTGGTGAGTA GTTCGCCTGC CGTTCGCTCG
CTGGGGGTAG AAGGTATTTC CATTCAATCC AAGCCCCAAC TCATTTTTCC TTCGGACGTA
AACCAGTTTG AATACGATAC GCCCACGAGT ACACGCGTGT ACATGGAAAT GTCGGGCGGA
GGGCCATATG ATGTCGTGAC GAGCTCGGGC ATTCAACTCA CGCCGCGGCC TGCGGAAAGC
CTTTTTTACG AAGCGCTGTT TGTGCGGCAG ACGATGGATT TCGGGATAAA GTCGGTCAGC
AATGCCTGTT TCACGACAAC CGATCTCCCC AAAGCTAAAT TGGTGGTTAA AAATCCCGCG
AGTACAAAGC CGTTTATCTC GGTACTGCCG GTGGCGTTCA GCGGCTGCCA CCGTGATAGC
CTTGAACTGG ACATTCAGAC GGCCGGTACT TTCGGGGAAG GAAATGTATT CCGCATTCAG
ATCGTGAAAG GCGATAATTG CTGCAATTAC GAAACGATAG CGACGGTGAG TAGCGGAGGG
AGGATCAAAC TGAAAATCCC GGGCGACGAT ACCCGTGGGA CGAACTCCTA CGGTACCGAA
AACTTTGGCC TACGCGTGGC TTCTACGGTG CCGGAAGTGA TCGGCACGGA GTATTTTCCA
TACCTGAGCT ACCCGCTTTA CGATATGTCG ATCGATTTTG TGAACCGGGC GACCGGTCAG
CCGGAGTTTA CTTCAAACGG AGATTTCTAC ATACATTTCA ATTCGCAGGG GGCGTCCATC
GATACCCTCG TGTATTCCGA TGGCAGGAAG GATTTCACAC TGACCGGGCT CAACGGCGGA
ATGTCGCCGT TTAAAATATG GCCGAAAGTG GGCAGTAACA CGTTCACAAT CAAGTCGGTG
ACGACCGTTT GCGGCAGGCA GGAAGTAAAT GTGAGCAAAT CGATGGAAGT AATTCCCTAC
CGGATCGTGA TGACGGAGAC ATTTGCCGAC ATGACCCTGT GCCCGGGCGC TCAGGTGAGC
GTGCCTTTCG TGATCCAGGA CGGCGATGCC TCCGGCGCGA CCTATTCGTG GCAGGTCAGG
AAGGAAAATG AGACTACTTT TCAAACCATT TTCACCGGCA AGGACAACAA CCGGATCAGC
GGCACGATTC CCGCAAGCTT TGGCCACGGT AAATACATTT CGCGCATCAG TGCGGAACAG
GGGCCAGTCT CCAACGAGGT GCCGGTGGTC GTAGGCCAGG CTCCAACGGT ATCTTTGACT
TTCCCGAATC ATCCGAACGA AAACCCGATT GTCCTCGATT ACACCAAGCA GCTGCTTTTC
CGCATCGACT ACACCGGTTC GTTCCCGATT ACGACGGTGA ACCAGTACAA TGAAAAGCAG
TACAAATATG AAACTCCGGA AGAATTTTCG CATTCACCTT CGGAACGGAC TACTTTTCAG
ATCAAATCGG TGAGCAATGC GTGTGGTTTC GGCCCGCCTT CGCAAGCGGT GGTGGTGAGC
CCGAACCCGG TGCTGGCGAT GTCGATGATC ATGGATGGCA CGGCCTGTGC GGGCGGGAAG
TCTATGCAGG TGATTTATAA GCTCAGCGGC GATTATGATT TGTCGGATTC GTTTATCCGG
TTCGAGCTGG AAGACCCTGC AACGAAAGCC AGCTACCTGC TCGATTCCAG CAAGATAGCG
TCCGGGCAGC GTGCATTTAA CCTTCCAAAA GGCATTAAGG CGGGATACTA TAACATGATC
GTGAACGTGC CTAAATACAA CCTGAAACAG CAGTTATCCA CCTACATCCA CACGGTGGTA
GATGCCACGC TTTTCGGAGA TATGACGATC AGCGCGGGCG ATACGGCGGG TTTGGGCCTG
CGGATCAACA ATATAAATTC CTATGAACGG ATCGGATATG CGTTGTCCGA TGGCACTGCG
GGGACGTTTA CCGTGCCGGA TGATTTCATC CCGGTGAGTC CGTCGAAAAC GACTACTTAC
CAGCTTGTTT CTATTACAAA TCAATGCGGC GCGGGCACGT TTTCGGGCTC GGCTGTCGTG
ACGGTGCAAG CCCGCACGGA GCGAAGGATT GCGGTCACAA ACTGGTGGTC GGCTACTTCG
GAGGCATTTT GCGCTACCGA TACCATTCGG GTGGACTACC GCACGCGCGG CAGTTTTTCG
GCGACAAACC GCTTCACCGT CCAACTGTCG GACACCACCG GGCAGAATTT CAGGGATATC
CCGACTACCG GCAGCAATGC GCCGCTTACT GCCATCGTGC CGGCCGATTT GCCGCGTGGC
CGTGGTTACC GGCTGAGGGT GGTGGCTTCC GACGCCGGAA CGTCCAGCTC GGCGCACGCG
GAGCCGCTTT ACCTGCGCCA TCGTGCGCGG GCACGCTTCG GCGCGACCTC CATTCCATTC
CACAGTGGCC CTGTGATAGC GCTCCCGCTG CAATTCGAAG GCGATTCGCC GTGGCGTTTT
TCCATAGGCA CAATGGCCCC ATTTCCAACA CGGGAAGCCA GCAAGGCGCA GGATACGGTG
TTCGTTCAGA ATGGCGGTCC GGCCGTTTTC AGGCTATTGG GTGTCTGGAA CGTGTGCGGC
AGCGGAACGT TAGCGGAGCC GGCAGAGTTG GTGTTCGAAG AAATCCTCGC TACCGAAGGT
CCGGCGACTT TGGAAGTAAC ATTGTCACCA AACCCGTCGA GCGATGTTTT CAGGCTGAAT
TTTCAGAATG CTGCGAAAAG GAACGTTCGC ATTTATACCC TGGCGGGCGC ATTGCTGTAC
CAGGAGAGCA TTACCAGCCA AAATCATCAG ATCGCGGCGG ATTCCTGGCC GTCGGGCATT
TACCTGCTGA CGATTGAAGA GCAGCAACAC AAACGCTCGT TCAGGATTTT CAAGCGGTAA
|
|---|
| Protein sequence | MIRPFTCVFL FWLAISGVLA QNASISITDS PAACLRTKHS IPVKLTGLFQ AGNQFWVQIK
TSAAAQSYSQ YAGTLKNGAI EVTFSDSALV SHPTLWIRIA ATAPAVESNW QENFRVHGKG
IITISPLLSD TLNKYDEHRF QTQTISSSDG TGVLNDSTSV RIYGSHIGPT SPQLDAKMVE
KTTDFTIAHA ENYCGPMQTK GVSRAVVNAV SLVTTLVSPS TICAGNTISV QFSGDGPLPA
ATSGWKVRLR EAIYTGDDKP GGRTMELPAK RTSDNTLEIT VPASFTPEFN TPLNIRVLSP
GGGIVGGRGK VLLQMQTPPQ VSFAKTAYTV AFGEAVLLQI QKTGTAPFRV KFSDGRDYFD
GASTQFDESN PLYKKPLQTT TYSIQSVSSG CGVHTPSPAP SAKVTVLPGM LLDDLNPAKP
FCEQQTARLH FVSSEPIPSS SALSMEIRHQ NGEIKTLPVT RDGEFVSFKI PVFADYNTEY
PRVRARFTFT LVSSSPAVRS LGVEGISIQS KPQLIFPSDV NQFEYDTPTS TRVYMEMSGG
GPYDVVTSSG IQLTPRPAES LFYEALFVRQ TMDFGIKSVS NACFTTTDLP KAKLVVKNPA
STKPFISVLP VAFSGCHRDS LELDIQTAGT FGEGNVFRIQ IVKGDNCCNY ETIATVSSGG
RIKLKIPGDD TRGTNSYGTE NFGLRVASTV PEVIGTEYFP YLSYPLYDMS IDFVNRATGQ
PEFTSNGDFY IHFNSQGASI DTLVYSDGRK DFTLTGLNGG MSPFKIWPKV GSNTFTIKSV
TTVCGRQEVN VSKSMEVIPY RIVMTETFAD MTLCPGAQVS VPFVIQDGDA SGATYSWQVR
KENETTFQTI FTGKDNNRIS GTIPASFGHG KYISRISAEQ GPVSNEVPVV VGQAPTVSLT
FPNHPNENPI VLDYTKQLLF RIDYTGSFPI TTVNQYNEKQ YKYETPEEFS HSPSERTTFQ
IKSVSNACGF GPPSQAVVVS PNPVLAMSMI MDGTACAGGK SMQVIYKLSG DYDLSDSFIR
FELEDPATKA SYLLDSSKIA SGQRAFNLPK GIKAGYYNMI VNVPKYNLKQ QLSTYIHTVV
DATLFGDMTI SAGDTAGLGL RINNINSYER IGYALSDGTA GTFTVPDDFI PVSPSKTTTY
QLVSITNQCG AGTFSGSAVV TVQARTERRI AVTNWWSATS EAFCATDTIR VDYRTRGSFS
ATNRFTVQLS DTTGQNFRDI PTTGSNAPLT AIVPADLPRG RGYRLRVVAS DAGTSSSAHA
EPLYLRHRAR ARFGATSIPF HSGPVIALPL QFEGDSPWRF SIGTMAPFPT REASKAQDTV
FVQNGGPAVF RLLGVWNVCG SGTLAEPAEL VFEEILATEG PATLEVTLSP NPSSDVFRLN
FQNAAKRNVR IYTLAGALLY QESITSQNHQ IAADSWPSGI YLLTIEEQQH KRSFRIFKR
|
|---|
| |