| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3160 |
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| Symbol | |
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| ID | 8226735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 3864902 |
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| End bp | 3869284 |
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| Gene Length | 4383 bp |
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| Protein Length | 1460 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644930990 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003087538 |
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| Protein GI | 255036917 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump
[COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCAAC TCATCAGAAC TGCCCTCCGA CAGCCCATTT CTATCGTGGT GGTCGTGATC
GGCATCCTAT TTTTCTCGGT TTTGTCGATC CGGAGCATTC CGGTCGATAT TTTCCCAAAC
CTCGACTTAC CGACCATTTA CGTGGTGCAG CCCTACGGCG GTATGGCTCC CGACCAAATG
GACGGCTTCA TCGCCACGCG CTACCAGGAC CACTTTCTGT ATGTGTCGGG GATTCGCGAT
GTGGACGTGA AAACGATCCA GGGTTTGTCG CTGATCAAAC TGTCATTCTA CCCCGGTACC
GACATGGCGC AGGCTGCTGC GGAGGTTGCC AACAACGTCT CCCGCGCGAA AGCCTACATG
CCCGAGGGCA CGGTGCCTCC GCAGGTAGTC CGTTTCGATG CGAGCTCAGT GCCGATCGGG
CAGATGGTTT TCGAAAGCGC TTCCCGCTCG CTGAACGAGA TCCAGGACTT CGCCTCGTCG
CGTGTGCGGC CGATGTTCAG CCGGATCGAG GGCGTTTCCA GCCCGCCGCC ATTCGGTGGT
AACCAGCGTA CGATCGTCGT GCGCGTGGAC CCGGAGCGCA TCAGAAGCTA CCATCTGACC
CCGGAAGAGG TCATTAAATC CATCATTGCC AACAACCAGC CCTCCCCCGC CGGTAACATC
CGCATGGGCG ACAAAACTTT GATGACGCCC GTTAACTCTC TCATTAAGAA ACCGGAAGAC
TTCCTTAACA TCCCGATTCG CGTGGGAGCC GGGCCTACCG TGTTCATCCG TGATGTGGGC
GTGGTGGAAG ATGGTGCTGA TGTTACCGTG AGCTACGCGC TGATCAATGG CCGCCGGGCG
GTTTATATTC CGGTAGTGAA AAAATCTGAC GCGTCGACGC TGGATGTGGT GAACAATATC
CGGGCTGCAT TGCCGCAATT ACGGAATGCG GTGCCGGAGG ATGTGAAGAT TTCCTACGAA
TTCGACCAGT CGGTGTATGT GACCAACTCG CTCAAAAGCC TGATTACCGA GGGTATTCTC
GGTGCATTGC TCACCGGTTT GATGGTGCTG CTCTTCCTCC GCGACTGGCG CAGCGTGATC
ATCGTGATCG TCACCATCCC GATTTCGATT CTTTCGGCGG TGATTTTGAT GAATTTATTT
GGACAAACGA TCAATATCAT GACATTGAGC GGGCTGGCAT TGGCTATCGG CGTGCTCGTG
GACCAGGCGA CGGTGACAAT CGAAAACATT CACCAGCACC AGGAAATGGG TAAACCGAAG
GAACAGGCCA TTTGGGATGC TTGTAAGGAA ATCGCATTCC CTGAATTCCT TATTTTGCTG
GCGATCCTGG CCGTTTTTGC GCCGTCGTTT GTGATGAGTG GTATTCCAAG ATCGATGTTT
TTACCACTCT CGCTGGCGGT CGGTTTTGCG ATGATCGCTT CGTTTTTGCT CTCTCAAACC
CTGGTCCCCG TGCTTGCAAA CTGGCTTTTG AAAGACCATC CGCACCACGA GGCGCCCACA
TTGGCATTGG ATAGCCAGGA GATTAAGGAT GTGATTGAGG AAGGCGAGCA CCCGTCGCTG
CCCCCTACCG GTTTTGAAAA ATTCAAACTA AAATACCTGA ACGTGCTCAA CGGCATTATG
GGCAAGCGCC TGATCGTGCC GGTATACCTG GTCGGCACCA TAGCACTGAT CGTCGGCGGA
TTCTTCCTCA TCGGCACCGA CATTCTTCCG AAAGCCAACA GTCACCAGTT TCAAATGCGC
ATGCGGGTGC CCGATGGTAC GCGCGTGGAA CGTACGGAAG AGGCTACATT AAAGGTTTTG
AATCTGATTC AATCGGAGGT CGGGAAGGGG AATGTCGAGA TATCGTCGGC TTATGTGGGC
ACGGTGCCTT CCAGCTACGG TACTTCCAAC ATTTTCGTGT TCAACAGCGG CCCGCACGAG
GCGGTTTTGC AGGTGTCGTT AAAAGAAGAA TTTCCGGTGA GAATGGATGC ATTAAAGGAA
AAACTGCGTG CGCGGATCGC CAAGGAAATC CCGAATCTGG CCATTTCATT TGAACCGATC
GAGCTGGTGG ACAAAATTAT GAGCCAGGGC GCTTCTACGC CGATCGAAGT GAGTGTGGCG
GCCAAGGATG TAGAAGAAGC CGGAAGGTTT GCCCGCAAAA TCCGGAAGGA AATGGAGCAG
ATCGCTTTCC TCCGCGATGT GCAGATCGCC CAGCCATTGG AATACCCGGT CCTGGATGTA
AAAATCGACC GCGAACGCGC AGGGCAGCTG GGCATTACCT CTACGCAAGT GGCGCGCTCG
ATGGTAGCAG CCACGTCGTC CAGCCGTTTT ACGGATAAAA ACCTCTGGCT CGACGACGCC
AAAGGGCTCG CTTACCAGGT GCAGGTCCAG ATTCCGGAAT ACCAGATGAC TTCCGTCGAA
GACATTGGTA CTATTCCATT GAAAACCGGC GTGAGCAACC CATTGCTGGC CGATGTGGCT
ACATTTTCCG AAAAAACCGC CCCCGGCGAA TACGACCGCG CCGGCCCCAA CCGACTCGTG
ACTGTGACGG CCAACATTCA TCAAAAAGAC CTCGGTGCAG CCACTACCGC CGTTCAGAAA
GCGATTAAGA ATGCAGGCGA GTCGCCACGC GGGGTTATTG TAGAATTAAA AGGCCAGACC
GACCTGCTGA CCGAAACATT GAGCAGCCTC CAAACCGGCC TGCTGATCGC CGTGGTGATT
ATGTTCTTGT TGCTGGCGGC TACTTATCAG TCATTCAAAC TGTCGCTGGT GGTACTTTCC
ACCATTCCGG CCGTGGTGGT GGGCTCGATT GGCCTCCTCC TGCTCACCGG CGCGACACTG
AACCTGCAAT CCTACATGGG GCTGATCATG TCGGTAGGTG TGTCGGTAGC GAATGCGATC
CTGATGGTGA CCAATGCCGA AAACCTGCGC CTCCAATTGC AGGATGCGCA TAAGGCGGTC
ACCCTCGCGG CTGGCAGCCG TATCCGCCCG ATCCTCATGA CGAGTATCGC GATGATCGCC
GGGATGGTCC CGATGGCATC CGGCATGGGC GAAGGCGGCG ACCAGATTGC CCCGCTCGGA
CAGGCGGTAA TCGGCGGGCT GATCGCCTCC ACATTGGCAT CGCTGCTCAT TTTGCCTGCC
GTATTCACGT TGGTGCAGCG CAAAGCGTCC GTCAACTCGG TATCCCTCGA TCCCGAAGAT
CCCGAAAGCA ATTTTTTCCG TAAAAAACTC CAAACATCCG TTTCCATGAA TACCCTGAAA
TCCATCCTGA TACTGATCAC CGTCGCCGTC GGCCTGAGCG CATGCAGCAG CACCGCCGAA
ACGAGCGATA GCCACGAAGC CAAATCCGCC GGCGAAGCCG CGGCGGGTAG CGCAAAAGAA
TCGGCTGCTG TGGAACTGGC TTACGTGAAA AGTATGAAGC CCGCCCGGCA AGTAGCATTA
CCCGGTGAAT TGAAGCCGTG GAATAAGGTG AGCATTCATC CAAAAGTGAA GGGGTTTGTC
AAAACGGTCA ATGTGGATCG CGGGACTTTT GTCAAAAAAG GCCAGGTGCT GTCGGTGCTG
GAAGCGCCGG AAGTCATTTC GGAACTCAGC CAGGCCAAAG CACAGCTCAT TGCCGCCGAA
GCAGCCTTGC ATGAAATCAC TACGCGCTAC CAGGCCACCG CATTGACATA CAGTAGATTG
CAAAAAACCA ACCGCACGGA AGGCGCCGTG TCGCTCAACG AGCTGGACCT TGCCAAAGCC
CGCGCCGCGG CAGACAGCGC TGCCATGTCG GTTGCGAAAG GCAACGTACA GGCCGCCAGG
TCATTCATGG AAACCAAAAC GGAGCTATCC CGATACCTGA CGGTTACGGC ACCGTTCGAC
GGCATTATTA CCGAAAGAAA TATCAGCCCA GGTGCGCTGG TAGGTCCGGG AGAAGGTGGC
GCGAAGCCGT TGTTCATTCT GGAAGATCAT ACCAAACTGC GCCTGACACT TGCGATTCCT
GAAAACATGT CGAGTGCCAT TCCCAACAAA GGCGAAGTGA GCTTCACCGT TTCGGCCAGC
CCCGAAAAAG TGTACAAGGC CGTTTACGCC CGCAGTTCGC GCACATTAAC CGAAGAAAAC
CGCTCGATGA TGACCGAATT CGACGTCAAT AACCGCTCCA ATGAGCTGAA AGCCGGCATG
TACGCGCAAG TGCAGCTCAA CACCGAGCGC ACAGGCAACA CCCTCTTCGT ACCCACCACG
GCCGTCGTCA ATTCCAGCGA GCAGGTATTC GTCATCCGCG ACAAAGGCAA AAAAGCCGAA
TGGGTCCCAG TCAAGCGCGG CGTTGTGGTA GACACGCTGG TAGAAGTCTT CGGCGATCTG
CACGATGGCG ATGCGATTGT AAAGAAGGCA TCGGAGGAGT ATCGGAATGG GGAGGATTTG
TAG
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| Protein sequence | MYQLIRTALR QPISIVVVVI GILFFSVLSI RSIPVDIFPN LDLPTIYVVQ PYGGMAPDQM
DGFIATRYQD HFLYVSGIRD VDVKTIQGLS LIKLSFYPGT DMAQAAAEVA NNVSRAKAYM
PEGTVPPQVV RFDASSVPIG QMVFESASRS LNEIQDFASS RVRPMFSRIE GVSSPPPFGG
NQRTIVVRVD PERIRSYHLT PEEVIKSIIA NNQPSPAGNI RMGDKTLMTP VNSLIKKPED
FLNIPIRVGA GPTVFIRDVG VVEDGADVTV SYALINGRRA VYIPVVKKSD ASTLDVVNNI
RAALPQLRNA VPEDVKISYE FDQSVYVTNS LKSLITEGIL GALLTGLMVL LFLRDWRSVI
IVIVTIPISI LSAVILMNLF GQTINIMTLS GLALAIGVLV DQATVTIENI HQHQEMGKPK
EQAIWDACKE IAFPEFLILL AILAVFAPSF VMSGIPRSMF LPLSLAVGFA MIASFLLSQT
LVPVLANWLL KDHPHHEAPT LALDSQEIKD VIEEGEHPSL PPTGFEKFKL KYLNVLNGIM
GKRLIVPVYL VGTIALIVGG FFLIGTDILP KANSHQFQMR MRVPDGTRVE RTEEATLKVL
NLIQSEVGKG NVEISSAYVG TVPSSYGTSN IFVFNSGPHE AVLQVSLKEE FPVRMDALKE
KLRARIAKEI PNLAISFEPI ELVDKIMSQG ASTPIEVSVA AKDVEEAGRF ARKIRKEMEQ
IAFLRDVQIA QPLEYPVLDV KIDRERAGQL GITSTQVARS MVAATSSSRF TDKNLWLDDA
KGLAYQVQVQ IPEYQMTSVE DIGTIPLKTG VSNPLLADVA TFSEKTAPGE YDRAGPNRLV
TVTANIHQKD LGAATTAVQK AIKNAGESPR GVIVELKGQT DLLTETLSSL QTGLLIAVVI
MFLLLAATYQ SFKLSLVVLS TIPAVVVGSI GLLLLTGATL NLQSYMGLIM SVGVSVANAI
LMVTNAENLR LQLQDAHKAV TLAAGSRIRP ILMTSIAMIA GMVPMASGMG EGGDQIAPLG
QAVIGGLIAS TLASLLILPA VFTLVQRKAS VNSVSLDPED PESNFFRKKL QTSVSMNTLK
SILILITVAV GLSACSSTAE TSDSHEAKSA GEAAAGSAKE SAAVELAYVK SMKPARQVAL
PGELKPWNKV SIHPKVKGFV KTVNVDRGTF VKKGQVLSVL EAPEVISELS QAKAQLIAAE
AALHEITTRY QATALTYSRL QKTNRTEGAV SLNELDLAKA RAAADSAAMS VAKGNVQAAR
SFMETKTELS RYLTVTAPFD GIITERNISP GALVGPGEGG AKPLFILEDH TKLRLTLAIP
ENMSSAIPNK GEVSFTVSAS PEKVYKAVYA RSSRTLTEEN RSMMTEFDVN NRSNELKAGM
YAQVQLNTER TGNTLFVPTT AVVNSSEQVF VIRDKGKKAE WVPVKRGVVV DTLVEVFGDL
HDGDAIVKKA SEEYRNGEDL
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