Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_2804 |
Symbol | |
ID | 8226377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 3465704 |
End bp | 3469528 |
Gene Length | 3825 bp |
Protein Length | 1274 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644930634 |
Product | methionine synthase |
Protein accession | YP_003087184 |
Protein GI | 255036563 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.294328 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAGCAA CTCAAAAAGC AGATATCCGC GAAATTCTCA AAAACCGTAT TCTGGTACTG GATGGCGCTA TGGGTACGAT GATCCAGCGG TATAAATTGC AGGATCACGA CTACCGGGGA GAACGGTTCG CGGACTGGCC GCATGATGTG AAAGGGAACA ATGATTTGCT TTCACTCACA CGTCCCGACA TTATCAAAGA AATTCACGCC GCCTATTTCG CGGCAGGGGC AGATATTGCC GAAACCAATA CATTTTCGGG CACCACCATC GCCATGGCCG ATTACGGCAT GGAGGAAATC GTGTACGAAC TCAACTATGA ATCCGCGCGG CTGGCACGCG AAGTCGCCGA CGAATTTACC GAACGCGAGC CGCACAAGCC GCGTTTCGTA GCAGGTTCGA TCGGCCCAAC CAACCGCACC GCGTCGCTTT CGCCGGACGT GAACAACCCC GGCTTCCGCG CCATCAGCTT CGACCAGCTC GTGGAAGCCT ATTACGAACA GGTAAAAGGC CTCACCGACG GCGGCTGCGA CCTGCTTTTG GTGGAAACCA TATTTGATAC ACTCAATGCC AAAGCCGCGC TGTTCGCGAT CGACCAGTTC TTTGCCGATG CGAAAGCCGG GAAAGTGGAA CACCTGGAAT CCTGGCGGAT CGAGCCGGGG CAGGCGTTGC CGATCATGAT CTCGGGCACG ATTACCGATG CTTCGGGGCG GACGCTTTCA GGACAAACCA CCGAGGCATT CCTGACCTCG GTATCGCATT TGCCATTATT ATCAGTAGGC CTCAACTGTG CATTGGGAGC AGATTTGATG CGTCCTTACG TGCAGATTAT GGCCAAAGAA TCGCCTTTTT ACACCTCGGC GCACCCGAAT GCGGGCTTGC CGAACGAAAT GGGCGAATAC GACGAGACGC CGGAGCAAAT GGGGGAGGTG ATCGACGGGT TTTTGAGGGA TAACCTGGTC AATATCATCG GCGGCTGCTG CGGTACCACG CCTGATCACA TTCGTGTGAT TGCGGAAATC GCCGGAAAAC ACAGCCCGCG ACCGCTGCCG GCTTCCGAAA CGGTGATGAA GCTTTCGGGT CTCGAACCGG TCAAAATCAA TGCATTGACC AACTTCGTGA ACATCGGTGA GCGCTGTAAC GTGACGGGTT CGAAGAAATT CGCCCGCCTG ATCCGCGAGA GCAAATACGA CGAAGCGCTG AGCATTGCGC GCGAGCAGGT AGAAAGCGGC GCGCAGGTGA TAGACGTTAA CCTCGACGAA GGGATGATCG ACGGTGTGGA GGCGATGAAG ACATTTGTGA ACCTGATCGC ATCCGAGCCC GACATTTCCA AAGTACCGCT GATGATCGAC TCCTCGAAAT GGGAGGTGAT CGAATCAGGG CTAAAATGCG TGCAGGGGAA ATCTATCGTG AACTCGATTT CTCTCAAAGA AGGAGAAGAG AAATTCAAGG AATCGGCCCG GACCGTGCTT CGCTACGGCG CCGCTACGGT GGTGATGGCT TTTGACGAAA AAGGCCAGGC CGACAACTAC GAGCGCCGCA TTGAAATCTG CGAACGTGCC TACCGCATTT TGGTGGACGA AGTAGGTTTC CCGGCCGAGG ACATCATTTT TGACCCCAAC ATCCTGACCG TCGCGACGGG AATGGAAGAA CATAACAATT ACGCGGTTGA CTTTATCAAC AGTGTGAGAT GGATCAAGGA AAACCTGCCG CATGCGAAAG TATCGGGTGG TGTTTCCAAC GTGTCGTTCA GTTTCCGCGG GAACGAGCCG GTGCGTGAGG CAATCCACAC GGCGTTCCTG TACCACGCGA TCAAGGCGGG AATGGATATG GGCATCGTGA ACGCAGGCCA GATCGGCATT TATGATGAAA TTCCGAAAGA CGTGCTGGAA CTGGTGGAGG ATGTGCTGCT TAACCGCCGC GCGGATGCCA CGGAACGTTT GGTAACTTAT GCGGAAACCG TAAAAGACAA GGGCAAATCG CAAAGTGGTC CGGATCTTTC TTGGAGACAA CTTCCTGTGA AAGAGCGAAT TTCTCACGCA TTGGTGAAAG GCATTGCTGA TTATGTGGAT GAAGACACCG AGGAATGCCG CTTGCTGTTC GATCGTCCGC TGGAAGTGAT CGAAGGCCCA TTGATGGATG GCATGAGCAT CGTCGGCGAC TTGTTCGGCG AAGGGAAAAT GTTCCTGCCG CAGGTTGTGA AATCGGCGCG TGTGATGAAA AAGGCTGTGG CTTATTTGCA GCCATTTATC GAGGCGGAGA AACAGGACGG CGGTTCATCG GCCGGTAAGA TTCTGCTTGC TACCGTTAAA GGCGATGTTC ACGACATTGG TAAAAACATT GTGGGCGTGG TGCTTGGCTG TAACAATTAC GAGATCATCG ACCTGGGCGT AATGGTGCCG ACCGACAAGA TCCTGGCCGC TGCGCAGGAA CATAATGTGG ATATCATCGG TCTGTCGGGG CTGATCACGC CATCGCTGGA CGAAATGGTG GGTGTGGCCA AAGAAATGGA GCGCCGCAGC ATGAAAATGC CGTTGCTCAT CGGCGGTGCT ACTACATCCC GCATTCATAC GGCGGTGAAA ATCGACCCGA ATTACTCGGG ACCGGTGATC CACGTGCTCG ATGCCTCCCG TTCGGTGCCG GTGGCCGGTA AGCTCATCCA GAGCGAGCAA AGCCAGGCCG AAGTGCTGGC GGATATCAAA GCCGAATACG CCAAGCTGCG CGACGACCAC TCAAAACGCG GCGGTGAAAA AGCGCATGTG GCCATCGGCA AAGCGAGGGA CAACAAGGCC AAAATCGATT GGACAAACTT CCAGGCAGTG AAACCGCAGT TCCTGGGTAC GCGGGTGTAC GACGATTACG ATCTGGCCGA AATTTCGAAA TACATTGACT GGACGCCATT CTTCCAGACC TGGCAGCTGC ACGGAAAATA TCCTAAGATT TTCGATGATG CCGTGGTTGG GAAGGAAGCA CAGCGGTTAT TCGAAGATGC AGCCGTGCTG CTCGGTGAGA TTATTCGCGA TAAAACACTG AAAGCCCGCG CCGTAGTGGG TTTCTGGCCC GCCAACTCGA TCGGTGACGA CATTGTGCTG CACCATTTCA ACGAAGAAAC GAGGGAGGTG CTTTGCGAAC GTCACGGGTC GCATCAGCAT ATTGAATATA AAATCAGTCA GCAAGGCGTC GAAAACCTGA ATGCAGGCGA GCTTGTGGCC GATACCGCTG CGGTATTGCA CCATCTGCGC CAGCAAAGCC AGAAAGCTGC CAACCTGCCC AATTACTGCT TGTCCGACTT CGTAGCACCG CTCGAATCGG GCCATACCGA TTATGTGGGT GGTTTTGCGG TGACGGCAGG TGTAGGAATA GAGGCGCTGC TCGAAAAATA CGAGAAGGAC CACGACGATT ACAACAGCAT TATGATCAAA GCCCTTGCCG ACCGTTTGGT GGAAGCATTG GCGGAATTAA TGCACGAAAA GGTGCGGAAG GAGCTTTGGG GTTATGCCAA AGAGGAGAGC TTCTCCAACG AAGAGCTCAT CAAAGAAGAA TACAAAGGCA TTCGTCCGGC ACCCGGCTAC CCGGCCTGCC CCGACCACAC CGAAAAGCGC CATTTGTTCG ACCTACTGAA TGCAGAAGAG CTGGGCATTA CATTGACGGA AAGCTTTGCG ATGTATCCGG CTAGCAGCGT TTCAGGCTGG TATTTTTCAC ATCCGGACAG CCGATATTTC CCGGTTGGAA AAATTTACAA GGACCAGGTG GAGGACTACG CACGCCGGAA AAACATGCCG GTGGAGGAGA TTGAGAAGTG GCTCTCGCCA GTGCTCGCTT ATTAA
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Protein sequence | MVATQKADIR EILKNRILVL DGAMGTMIQR YKLQDHDYRG ERFADWPHDV KGNNDLLSLT RPDIIKEIHA AYFAAGADIA ETNTFSGTTI AMADYGMEEI VYELNYESAR LAREVADEFT EREPHKPRFV AGSIGPTNRT ASLSPDVNNP GFRAISFDQL VEAYYEQVKG LTDGGCDLLL VETIFDTLNA KAALFAIDQF FADAKAGKVE HLESWRIEPG QALPIMISGT ITDASGRTLS GQTTEAFLTS VSHLPLLSVG LNCALGADLM RPYVQIMAKE SPFYTSAHPN AGLPNEMGEY DETPEQMGEV IDGFLRDNLV NIIGGCCGTT PDHIRVIAEI AGKHSPRPLP ASETVMKLSG LEPVKINALT NFVNIGERCN VTGSKKFARL IRESKYDEAL SIAREQVESG AQVIDVNLDE GMIDGVEAMK TFVNLIASEP DISKVPLMID SSKWEVIESG LKCVQGKSIV NSISLKEGEE KFKESARTVL RYGAATVVMA FDEKGQADNY ERRIEICERA YRILVDEVGF PAEDIIFDPN ILTVATGMEE HNNYAVDFIN SVRWIKENLP HAKVSGGVSN VSFSFRGNEP VREAIHTAFL YHAIKAGMDM GIVNAGQIGI YDEIPKDVLE LVEDVLLNRR ADATERLVTY AETVKDKGKS QSGPDLSWRQ LPVKERISHA LVKGIADYVD EDTEECRLLF DRPLEVIEGP LMDGMSIVGD LFGEGKMFLP QVVKSARVMK KAVAYLQPFI EAEKQDGGSS AGKILLATVK GDVHDIGKNI VGVVLGCNNY EIIDLGVMVP TDKILAAAQE HNVDIIGLSG LITPSLDEMV GVAKEMERRS MKMPLLIGGA TTSRIHTAVK IDPNYSGPVI HVLDASRSVP VAGKLIQSEQ SQAEVLADIK AEYAKLRDDH SKRGGEKAHV AIGKARDNKA KIDWTNFQAV KPQFLGTRVY DDYDLAEISK YIDWTPFFQT WQLHGKYPKI FDDAVVGKEA QRLFEDAAVL LGEIIRDKTL KARAVVGFWP ANSIGDDIVL HHFNEETREV LCERHGSHQH IEYKISQQGV ENLNAGELVA DTAAVLHHLR QQSQKAANLP NYCLSDFVAP LESGHTDYVG GFAVTAGVGI EALLEKYEKD HDDYNSIMIK ALADRLVEAL AELMHEKVRK ELWGYAKEES FSNEELIKEE YKGIRPAPGY PACPDHTEKR HLFDLLNAEE LGITLTESFA MYPASSVSGW YFSHPDSRYF PVGKIYKDQV EDYARRKNMP VEEIEKWLSP VLAY
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