| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2440 |
|---|
| Symbol | |
|---|
| ID | 8226012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3004125 |
|---|
| End bp | 3005345 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644930272 |
|---|
| Product | selenocysteine synthase (seryl-tRNASer selenium transferase)-like protein |
|---|
| Protein accession | YP_003086823 |
|---|
| Protein GI | 255036202 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR01437] uncharacterized pyridoxal phosphate-dependent enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0244624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACC GTAGAGATTT AATCAAGCAT TTGTCCGCTT TCCCGCTCCT GGGCGGATTT
TTGGGCAATG GCACGGCCGA AGCAGCCGGC CTGCTCGCGA AGGCACCCGC ACGTAACCTC
GCCAAGGAAC TGGGCATCCG CACGTTCATC AATGCCGCAG GAACTTACAC CGCCATGACC
GGCTCGCTCA TGCAGGACGA AGTAGTGGCA ACGATCCAGG GCGCAGCGAA GGAGTTCATG
ATGCTCGATG AAGTCCAGAC GAAAGTAGGC GAGAAAATCG CCGCCATTAC CCACGCCGAA
TCGGCCGTGG TGACGGCCGG CTGTTTCTCC GCGCTCACGC TCGGCCTCGC TGGCGTGCTC
ACGGGCATGG ACCAAAAGAA AGTAGAAGCC CTGCCGCACC TGGAAGGCAC CGGCATGAAA
TCGGAAGTGA TTATCCAGAA AGGCCATAAC ATCGGCTACT CGCATGCATT GACCAACACC
GGCTGTAAAA TCATCCAGGT TGAAACTGCG GAAGAATTGC AGAAGGCGAT CAACGAGAAA
ACCGCATTGA TGTGGTTCCT GCACATCCAG TCGGATAAGG GGCAAATCAA CCACCAGCAA
TGGGTGGAAA TCGCTAAAAA GAACGGAATA CCCACCATGA TCGACATGGC TGCCGACGTG
CCGCCGGTCG AAAACCTCTG GCGCTTCAAC GACATGGGCT TCGACCTCGT GTGCGTATCG
GGCGGAAAAG CGATGCGCGG GCCGCAAAGC GCGGGTATCC TGATGGGCAA AAAGCAGTTC
ATCGACGCTG CCCGCCTGAG CATGCCGCCG CGTGGCTCCA CCATCGGGCG CGGTATGAAA
GTGAATAAAG AGGAGATCCT CGGCATGTAC GTCGCGCTCG ACAATTTTGT CAAAATGGAT
CACAAAAAAG AGTGGAAAAC CTGGGAAGAC CGCGTGGCGA CGATCGAGAA TGCAGTCAAA
AGTGTGAAGG GGGTCATGAC CGAAGTGACT GTACCTGAAC TCGGTAACCA CACACCTACA
TTGAAAGTAT CGTGGGATGC CGCCAAAGTG AGCCTGCCTG TGAAGACATT GCAGGAAAGC
TTGCGCAAAG GCAACCCGTC TATTGAAGTA ATGGCCGGCG AAAACAATTC GCTCAGCATT
ACCACCTGGA TGCTCAAATC GGGCGAGGAG AAAATCGTGG CATCCAGACT GAAAGAAGAA
CTGTCGAAAG CAGTTGTTTA A
|
|---|
| Protein sequence | MINRRDLIKH LSAFPLLGGF LGNGTAEAAG LLAKAPARNL AKELGIRTFI NAAGTYTAMT
GSLMQDEVVA TIQGAAKEFM MLDEVQTKVG EKIAAITHAE SAVVTAGCFS ALTLGLAGVL
TGMDQKKVEA LPHLEGTGMK SEVIIQKGHN IGYSHALTNT GCKIIQVETA EELQKAINEK
TALMWFLHIQ SDKGQINHQQ WVEIAKKNGI PTMIDMAADV PPVENLWRFN DMGFDLVCVS
GGKAMRGPQS AGILMGKKQF IDAARLSMPP RGSTIGRGMK VNKEEILGMY VALDNFVKMD
HKKEWKTWED RVATIENAVK SVKGVMTEVT VPELGNHTPT LKVSWDAAKV SLPVKTLQES
LRKGNPSIEV MAGENNSLSI TTWMLKSGEE KIVASRLKEE LSKAVV
|
|---|
| |