| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2294 |
|---|
| Symbol | |
|---|
| ID | 8225866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2833121 |
|---|
| End bp | 2835616 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644930129 |
|---|
| Product | alpha-L-rhamnosidase |
|---|
| Protein accession | YP_003086680 |
|---|
| Protein GI | 255036059 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.690248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGGC CGGATAAGCA TCAGTTTCGC CTCAAATTAG AAAGTATTAT CATGTATATC
AGAGTACAAA TATTGGTAAG AATGAATGCA TTGAACCGCT TGCTGGTGTT TGTACTCTGT
TTATGCAGTT TGCAGGGGAA AAGTCAGGCA AAGGAGCCTT ATCTGCCGTT GTATGGCGGG
GAGTTTAAAT CAAAGTCTGT TCAAAATTCA CCTGATCCGA TCATCCATTA TCAATGGAAA
AATCCCCGGG CCGACGATAG TTTGCAGATT TACACGCTGC TTCCCCGTCA GATAACTCCC
AGTCGTTCAA ACGCTTTCCG AATAAAGGAT TCGGGCATTA CCGTCTCAGG CACGGGCGAT
TTGCAATTTG ATTTCGGTCA GGTCAATGCA GGATGGATCG AGTTCGATTC GGACGATCTG
AATGGTGATG TGCAGGTAAG CCTCAGCGAA TACAACGAAC CTGCCATTCT CAATGCAGGC
GCGCAGCACC CCGTCAAAAC GCTCAAACCC GCGCGATATG GAAACACTTA CCGCCTCGAA
CTGAACCAGC AGCTATATGA AGGTGTCCGG TTTGCGTGGC TGCATGTAAA ATCGCTCTCG
AAACCGTGGA GTTTGACCAA TTTCCGGCTG ATCTGTCAGA CCAAACCAGT CAACTACCTC
GGCAGTTTTT CCTGCAATGA TACATTGCTC AACCGCATCT GGTACACCGG CGCATACACC
GTAAAACTCA ATCTCTTGCA GGATTACCTC GGCGCGATCC TGATGGAGCG CAGCGACCGG
CATTCGTGGA CAGGCGACGC ATATCCTTCG CAGGCGGCGT CTATGGCGGC TTTCGGCAAT
TTTGATTTTG TTAAAAAGAA TATCGCATTT ACCGCACCGC AGGACAATGG TATTGCCGCC
TATTCCATGT ACTGGGTGCT GGGACTGGTG GATTATTTCA GGTATACAGG CGATGCGGAC
TTTTTCAAAG CGTACCTGGA TAACGCCGCA AAACGGCTGG ACGCCGCCTA TGCGCATTTC
GACAAACTAC CCAACCTGGC CTTTATGGGC TGGGACGAGC GGCTGGGTGC GGGATTTGAG
CGACCAAACC TGCCCGAAAG CGAGCGGGCG TATCGCTGGC TGTGTGTTAA TGCATGGTCA
AAGTTTTCCG AATGCCTGTC GGTGCTCGGG AACCAAACGC TTGCCGAAAA GTACCGCCAG
TATGCGGCCG CTAAGAAGAA ACAACTTTCC AATGACCAAC TTTCGGGCTA CGGCGTACAC
GCACTTGCCG AGGTTTTCAA TGCCGAACCA AATAGCTCTG AAACCGTGCT GAAACTGGCT
TCAAAATGGT TTACAGACCG GAATGCGCGC CTCTCCTATT CGCCTTTTAA CCAGTATTTT
ATTTTGCAGG GAATGGCCAG GGCTGGCTAC ATGCGGGAAG CGCTCACCAC AGTCAGAGAC
CAATGGGGCG GGCAAATCCG GTACGGCGGT ACCACATTCT TTGAAGTGTT CCGCCCATCG
TGGAACGATG CACTGGCACC CAACAGCGCG CCCATTAACA ACCAATGCGG CTACACAAGC
CTGACGCACC CCTGGGGCGC TGGCGTAACG AGGTGGTTGT CCGATGAAAT CCTGGGTGTA
CGGCCCGTTT CCGCCGGCTT TAAAATATTC AGCATTATGC CGTTTCTGAA CGAATCGCTG
ACCTGGGTAA AAGGCGATGT ACCCACGCCG TCGGGCATTA TATCGGCGTC TTTTAATTCG
GTAACGGGTG ATTGTGAAGT GCAAATTCCA AAAGGTACCA CCGCGGCGAA AATCGGACTA
CCCAAGAATG GAAAGTCCAT TAACAGAATT ACGCTTAACG ACCGCCCGGT AAAAATCACG
AGCGAAGATG CGCGCTACGC CTATCTTTCG GACCTGTCGG CAGGCAGCTA TCACATCAAA
ATCACTTACG GAAAATCTGC GCCTGCGGTC AGCAATACCG GAAAGGATGA GCTGACTTAT
GCGCTGGCCC GGTTTACGGT CGACTCAACG ATCGGCGGTA ACCGGAAAAC CCGTTTAGGC
AAAGACGGAT ACTTCCTGGC GGGCCGCAGT ACGAACGAAA ACACGCTTAA AAAGCCAGCT
TACATTGATT CGATACGGAT CGACAGGGCG ATCAACCAGA CGTGGGCAGA TCAGCATTCG
GACGAGAATT CACCACAGTC AGCCGGCACG AATGCCAGTG CGTTCGTCAC ACAAGATCCC
AAACCGACGC TGCAGACATT TACGCTGGAT ATTTTTCAGC ACGATTCAAC GGCTTACGAG
CTGACACTCC ATTTCGTCGA TCCCGACCGC AAAGGAAGGC GCTCGGCCAT TGAAGTGTTC
GACGCGCATA CATTGGAACT CCTCGCTCCT GTTCAGGTAA TCGGCAATTA CCAAAACGGG
AAATACCTGA GATTTAAAGT GGACCGCTCC ATTCGGATAC GCGTCAATCA CGTGCGGGGG
CCCAATGCTG CTCTTGCGGG GATCTTGTTT AATTAA
|
|---|
| Protein sequence | MSRPDKHQFR LKLESIIMYI RVQILVRMNA LNRLLVFVLC LCSLQGKSQA KEPYLPLYGG
EFKSKSVQNS PDPIIHYQWK NPRADDSLQI YTLLPRQITP SRSNAFRIKD SGITVSGTGD
LQFDFGQVNA GWIEFDSDDL NGDVQVSLSE YNEPAILNAG AQHPVKTLKP ARYGNTYRLE
LNQQLYEGVR FAWLHVKSLS KPWSLTNFRL ICQTKPVNYL GSFSCNDTLL NRIWYTGAYT
VKLNLLQDYL GAILMERSDR HSWTGDAYPS QAASMAAFGN FDFVKKNIAF TAPQDNGIAA
YSMYWVLGLV DYFRYTGDAD FFKAYLDNAA KRLDAAYAHF DKLPNLAFMG WDERLGAGFE
RPNLPESERA YRWLCVNAWS KFSECLSVLG NQTLAEKYRQ YAAAKKKQLS NDQLSGYGVH
ALAEVFNAEP NSSETVLKLA SKWFTDRNAR LSYSPFNQYF ILQGMARAGY MREALTTVRD
QWGGQIRYGG TTFFEVFRPS WNDALAPNSA PINNQCGYTS LTHPWGAGVT RWLSDEILGV
RPVSAGFKIF SIMPFLNESL TWVKGDVPTP SGIISASFNS VTGDCEVQIP KGTTAAKIGL
PKNGKSINRI TLNDRPVKIT SEDARYAYLS DLSAGSYHIK ITYGKSAPAV SNTGKDELTY
ALARFTVDST IGGNRKTRLG KDGYFLAGRS TNENTLKKPA YIDSIRIDRA INQTWADQHS
DENSPQSAGT NASAFVTQDP KPTLQTFTLD IFQHDSTAYE LTLHFVDPDR KGRRSAIEVF
DAHTLELLAP VQVIGNYQNG KYLRFKVDRS IRIRVNHVRG PNAALAGILF N
|
|---|
| |