| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2262 |
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| Symbol | |
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| ID | 8225834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 2782309 |
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| End bp | 2785572 |
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| Gene Length | 3264 bp |
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| Protein Length | 1087 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644930098 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003086649 |
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| Protein GI | 255036028 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.418018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCA GTGTGTATGG TATGGGCGTT CTCATCCTGG CGACGCAACT GCTGCTGGCA
GGGGTAAGCG GTGCGCAGGA CATCCGCGAA ACCAATGTCA CCATCGGCCT GGAAAAGTCG
TCTTTGAAGG AAGCGCTGCA AGCGCTTCAA CGGGAATCGA AGTACAATTT CTTCTATCTT
TCCAAATCCG TTGCACCCTT CGGCAACATT ACCATGCGAA AGGAAACGCG TACCGTTCAC
CGTACGCTGG AAATAATGCT GGAGCGTACG AGCTTGGTTT TCAGGCAGGA AGGTAAAAGT
ATCATCCTCA CCGAACGAGC GGCCGCTTCG CCCGAAGCCA GTACCCGCGT CCCGGTGAAG
GGGAGGGTGA CGGATAAGGA CGGCCAGGGG CTGCCCGGCG TCAGCGTGGT GATAAAAGGA
ACGAGTAACG GTACCATTAC CGACGAAAAT GGGAACTATC ACCTTGAATT ACAGGCCGAT
AATCCCGTGC TGATATTCAG TTTCGTAGGT TACATTGCCC AGGAGCTCGA AGTGGGCAAC
CGCGAAGTGC TGGACGTATT GCTGGCGACG GACGAGAAGG CATTGGAAGA AGTGGTCGTG
ATCGGTTATG GCACGCAGAA GAAGCGCGAC CTTACCGGGG CGGTTTCCAG CGTGGACAAC
ACGAAAAACG AAACATTACC CAACACGAAC GTCATTCAGG CGCTGCGCGG GACGGTACCG
GGGGTGAGCA TCAGCGCGGG CGGTAATGCC GGATCGGGCA ACGAGATTTC CATTCGCGGA
CAAAACTCGC TGACCGCGAA CAATGCCGCA TTGATCGTCG TGGACGGCAT TATTTACAGT
GGCCAGCTCG GCAACCTGAA CCCCAACGAC ATCGCATCGA TTGACGTGCT CAAAGATGCG
AGTTCGGCCG CCATTTTTGG AGCAAAAGCG GCTAACGGGG TGATTTTGAT CACCACCAAA
AAAGGAACTA CGGAAAAGCC AACGATCCAG TTTAACAGCT ACGCCGGCGT GCAGGATTTC
CTGATGTCGA TGGACATGGA AACGCCGGAG CAGTACATTC AGAAGCGTTT GAACTATCAG
AAAACCCTGG CATTCAGGGG CGTCGCACCT CAGCCCGACC TGAGCCGGCC GGCCCAGTAT
CTGAATACGG ATGAAATCGA GAATTTCGAG AACGGACGGA CGATCGACGC CATTGAGAAA
ATCTCCCAGC GTGCTCCCAT TCAGAGTTAT AATTTGAATA TCGGGGCAAA AACAGCCAAA
ACGAGCTATT ACCTGGCGGG CAGCTGGACG GATCAGCAGG GTAAGGTAAT GGGCGATCAG
TTCAAACGCG CCTCCCTGCG CCTGAATCTG GAAACGAATA TTACCGACTG GCTCAAATTC
GGGACAAACT CCTCATTCTC TTTTGTGGAT GTTTCCGATT CGCCGGCCAA CCTGGGCGCC
GCCTTTCAGC TCAGTCCTTA TGCGAGGTGG TATCTCGACT CGGCTCAAAC CGTCCTGAAC
CCGATCCCGA TGACGGACGG GCTGGTGGCC AATCCATTGC TGCCCACGCT GAACCTGCTT
ACCAATCACC GCAAGGACCT GTTCGGCATC TTTTATGGGG AAGTCAACGT GCCGTTTGTG
CCGGGACTTA GTTACCGGTT CACGTATTCC AACAACATCA TCAGCCGGAA GGAATTCAAT
TTCACACCGG CGTTCAATGC GGGCGGCCTC AACCGGGTGT CCAGCGCAAG CGACATGACT
TTCGAATCGC AGGACATGTA CCTCGAAAAC CTGGTGAAAT ACAACCGTGC ATTTGGCACC
CATCACCATA TCGACGCTAC ATTTCTTTAT AACTACAACT ACGCACATGA CAATACCGTA
ACCGCCAGTG CCAACACCTT TCCTACTGAC GTGCTTACCT ATTACAGCCT GAGCCTCGGG
GAAAACCAGA TCTCCAATGC CTCCTATTCG GATTACCGGG CAATTGCGAT GATGGCCAGG
CTGAACTACA AATACAAGGA CAGATACCTG CTCACGCTCA CCGGGCGACG CGACGGCGCT
TCCGTGTTCA GCGTCAATCA CAAATTTGCA TTCTTCCCTT CCATGGCGCT CGGCTGGGTG
ATCTCCGATG AGGCATTCCT GAAAAATGTA AGGGCGATAG ACTTCCTCAA AGTCCGGTTT
TCCTACGGTG TGAACGGCAA CCAGGGGATC AACCGCTACC AGTCCCTCAG CAGGATTGAG
CCCGGCACAG GCTACAATTA TCTTTTCGGG GGCGCCACGG CGTACGGCAT TGCCAAAACA
AGCATGGGCA ACGAAAACCT GAAATGGGAA AGCACCTATT CGGCCAACCT GGGTGTTGAT
TTTGAATTAT TCAAAAATCG CATTTCCGGT AACCTGAACC TGTATAACTC CGACACGAAA
GACTTGCTCG TATCGCGCAC CATTCCTACG CTCAACGGCT TTTCCAGCGT GTTGTCCAAC
CTGGGTGCGG TGAACAACAA GGGTATCGAG ATTGTGGTGA ATACCGTCAA TATCCGTAAG
CGGGATTTCG AATGGACCAC CTCTTTGAAC ATGGCCCGCA ATGTGAATAA AATCACGAAG
CTGTACGGGA AAAAAGACGC CTCGGGACGC GAAATGGACG ATATCAGCAA CAACTGGTTT
ATCGGCAAGT CGGTAGGAGC GTATTATAAC TACGAGGTGG ACGGCGTGTG GCAGATCGGC
GAGGAGATAC CCGCCGGCTT CCGACCCGGC GATTTCAAGC TCAAAGACCT CAACGGCGAC
GGCAGTATTA CCCCGGACGC GGACCGCTCC ATTATCGGGT ACAATGTTCC GAAATTCACC
TATGGGATCA GTACAAACCT GCGGTACAAA GGGCTGGGCC TGTTTGTACA GCTCAGCGGC
TCAGTAGGCG GAATGCGCAA CAATGCAAGC ATCTACAACC CGGCATCGAG CTTCACTTAC
CGCGTGCGGG ACAAATACAT TGACTGGTGG ACCCCTGAAA ACCCTACCAA CAAATACAGC
TCCATGGACT ACCAGAACTC GTACGGCATT GCCTGGCTGC AAAGTACGAC GTTCCTGCGC
GTGCAGGATG TGTCGTTGTC CTACGAATTT GGCAAGGCAA TAACCGAACG ACTCAAAATG
AGCAGGTTGC AGGTTTATGT GAGTGCCAAA AACCCGGTAC TATTTTCCAG ATGGGGTGGA
TGGGACCCCG AGACCACCGG GTCGGGGCGC GGACAGTACC CTACGATGAA ATCCTTTACG
GCCGGACTTA ACCTGAGCCT TTAA
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| Protein sequence | MKISVYGMGV LILATQLLLA GVSGAQDIRE TNVTIGLEKS SLKEALQALQ RESKYNFFYL
SKSVAPFGNI TMRKETRTVH RTLEIMLERT SLVFRQEGKS IILTERAAAS PEASTRVPVK
GRVTDKDGQG LPGVSVVIKG TSNGTITDEN GNYHLELQAD NPVLIFSFVG YIAQELEVGN
REVLDVLLAT DEKALEEVVV IGYGTQKKRD LTGAVSSVDN TKNETLPNTN VIQALRGTVP
GVSISAGGNA GSGNEISIRG QNSLTANNAA LIVVDGIIYS GQLGNLNPND IASIDVLKDA
SSAAIFGAKA ANGVILITTK KGTTEKPTIQ FNSYAGVQDF LMSMDMETPE QYIQKRLNYQ
KTLAFRGVAP QPDLSRPAQY LNTDEIENFE NGRTIDAIEK ISQRAPIQSY NLNIGAKTAK
TSYYLAGSWT DQQGKVMGDQ FKRASLRLNL ETNITDWLKF GTNSSFSFVD VSDSPANLGA
AFQLSPYARW YLDSAQTVLN PIPMTDGLVA NPLLPTLNLL TNHRKDLFGI FYGEVNVPFV
PGLSYRFTYS NNIISRKEFN FTPAFNAGGL NRVSSASDMT FESQDMYLEN LVKYNRAFGT
HHHIDATFLY NYNYAHDNTV TASANTFPTD VLTYYSLSLG ENQISNASYS DYRAIAMMAR
LNYKYKDRYL LTLTGRRDGA SVFSVNHKFA FFPSMALGWV ISDEAFLKNV RAIDFLKVRF
SYGVNGNQGI NRYQSLSRIE PGTGYNYLFG GATAYGIAKT SMGNENLKWE STYSANLGVD
FELFKNRISG NLNLYNSDTK DLLVSRTIPT LNGFSSVLSN LGAVNNKGIE IVVNTVNIRK
RDFEWTTSLN MARNVNKITK LYGKKDASGR EMDDISNNWF IGKSVGAYYN YEVDGVWQIG
EEIPAGFRPG DFKLKDLNGD GSITPDADRS IIGYNVPKFT YGISTNLRYK GLGLFVQLSG
SVGGMRNNAS IYNPASSFTY RVRDKYIDWW TPENPTNKYS SMDYQNSYGI AWLQSTTFLR
VQDVSLSYEF GKAITERLKM SRLQVYVSAK NPVLFSRWGG WDPETTGSGR GQYPTMKSFT
AGLNLSL
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