| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2231 |
|---|
| Symbol | |
|---|
| ID | 8225803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2736382 |
|---|
| End bp | 2739495 |
|---|
| Gene Length | 3114 bp |
|---|
| Protein Length | 1037 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644930067 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003086618 |
|---|
| Protein GI | 255035997 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAA CTTTGACCCT GAAACCATTG AAACACTTAC CCGGCCGGGC GGCGATTCTG
CTGCTGCTCG CCGCCGCTCC GGCCGCTACC TTTGCGACCG CGCCGAATAT CACCGCAACC
CGCCAGAAAC AGGACAGGAC CGTGTCGGGC GTCGTGAAAG ACCAGAAAGG CGAGCCGATA
CCCGGCATTA ATATTCTCAT CAAAAACTCC GTGACCGGCA CGAGCACCGA TTCGCAAGGC
AAGTACAGCA TTAAGGCCGA CGCCGAGGCT ATCCTGGTAT TTTCCGGCAT TGGCTTTGTA
ACCCGCGAAG TGGCCGTGAA CAACCAGAGC TCCATCGACA TCAGCTTGCA GGAGGACACC
CGCCAGCTGA ACGAGCTTGT GGTGGTCGGC TATGGAACGC AGAAGAAAAG CGACCTTACC
GGCTCTGTTT CGTCCATTTC CGAAGCGCAG TTCAAGAAAA CACCGGTGGC ATCGCTCGAT
AACGGCCTGC GCGGAAGGGC GGCGGGCGTG CAGGTAACGA GCACGTCCAA CCAGCCCGGA
GGCGCCACGA GCATCCGTAT CCGCGGCAGC AACTCGGTGA ATACCGGCAG CGAGCCTTTG
TACGTGATTG ACGGCTTCCC GGTTTTCAAT GACAATGCTG CCACTGCCGG CGGTGCTACC
GTAGGCCCGA AACTGAATGC ATTGTCGCTG ATCAACCCGA ACGACATCGT GTCCATCGAG
GTGTTGAAGG ATGCGTCGGC GGCGGCCATT TATGGCGCGC GCGGTGCCAA CGGCGTGGTG
CTTGTGACCA CCAAAAAAGG CCAGGAAGGC CGGATGAAGA TCGATATCAA TGCCTACTAT
GGCGTTCAGC AGGTGTCGAA AAAGCTTCCG CTGCTGAATG CGACCGAATA TGCCCAGCTC
GTAAACGACG CGAACGGAAA GGAAATTTAC ACGCAGGAGC AGATCGCGTC CTTCGGCAAG
GGTACCGACT GGCAGGACGA GATTTTCCGT TCCGCGCCGG TGCAGAACTA CCAGGTAACG
GCCTCCGGCG GCGATGCCAA AACGAAATAT TCCCTGTCGC TCAACTACTT CGATCAGGCC
GGAATCATTA TCAATTCCGA CTTCAAACGC TATTCGGGCC GTTTCAACTT CGAAAAGCAG
GCCACATCGA GGCTTTCACT CGGCGCGAAC CTGAGCATTG CCAACACCAA TGCCAACCAG
GCGCTGAGCA GCACGGGCGG CGGCGAAGGC ACGCAGGGTG TGATCGTTTC GGCCCTCGAT
TTTAACCCCA TCCTGAAACC GCGCAATGCC GACGGCACCT ACGTACTGGA AAACGACCGC
GGTATCCCCA TCGGTAACCC CGTAGCCACC GCATTGGAGC TGACCAACAA ATCGGCCACC
ACGCGCTTCC TGGGCAATGT TTTTGCCGCT TACAAGATCA TCGACGGCCT GGAATTCCGG
ACGAGCATTG GTGCCGACAT TACGTCTACC GGCGAAAAAT ACTACGCACC CCGCACCATC
CTCGCAGGCT CCGCGGCGCA GGGCATCGGT CGCGTTTCCA CTTCCAACGG CACGTCGTGG
CTGAATGAAA ACACGCTGAC CTTCAACAAA ACCTTCGGTA AGCACGCCGT CACGGCATTG
GCCGGTTTTT CCGCCCAGAA ATACACCCGA AACCTGCTCA CTTCCTCCGC TTCCGGCTTT
GTGAACGACC TGCTGGGCGC GGATAACCTC GAATCGGGCG CGATCATCCG CACGCCGGTG
ACGAACACAA ACGATTGGAG CCTCATTTCG TACATCGGGC GGATCAATTA CGGGTTTAAC
GACAAGTATC TGCTCACGCT CACTGGCCGT GCAGATGGTT CGTCAAAGTT CGGTAACAAC
AACAAATACG GCTTTTTCCC GTCGGGATCG GTGGCATGGA AGCTGTCCGA GGAGGAGTTT
ATCAAAGACA TCAACGCCAT TACCGAACTG AAACTGCGCC TGAGCTACGG CCGGATCGGT
AACCAGGAGA TCAACAGCTA CCAGTCGCTG GCGGGCCTTA CGGGCGCGAG CTACATCATC
GGCGATAAAG TGGTGAAGGG TTTTGCCCCC AACAACATTC CCAACCCCAA CCTGAAATGG
GAAACCACCA CGCAAACCGA CCTCGGTGTG GACCTGGGCC TGTTCCGCAA CCGACTGAAC
CTGACGTTTG ATGCCTATTA TAAAAAGACG ACCGATATGC TCCTGAACAT CAACGTGCCC
TGGTCGACCG GCTTTGCAAG CGCGCTGCAA AACATCGGAA GCATTGAAAA CAAAGGGATA
GAGCTCGGCA TCCAGGCTGT GGTGCTGGAC AAGGACCTGA AATGGAATAT CAATTTCAAC
GTTGCGGCTA ACAAGAACAA GGTACTCGAC CTCGGCCCGG TTTCGCAGAT CCTGACGGGC
GAGATCAATG GTTATCTCAA AATCAGCGAT CCGGTGGTGA TCGTGCCGGG CCAGCCGCTC
AACTCGTTTT ACGGCTATGT GAGCGACGGC ATTTTCCAAA CCGGCGACGA TATTGCCGGC
GGCGCGCAGA AAACCGCCGT GCCCGGCGAC CGCAAATACA AAGATTTGAA TGGCGACGGC
GTGCTGGATG CCAAAGACCG GACTTTCATC GGCAATGCAC AGCCCAAGTT TTTCGGCGGG
TTTACCAACG ATTTTAGCTA CAAAGGCTTC GACCTGAGCG CTTCCTTCAA CTACGTGGTA
GGCAACAAAA TCCTGAACAG CACCCGCGCC GACCTCGATT TGCCGACTGG CCAAAAAAAC
AGCTCGGCCC GTGTCAAAGA CCGCTGGACG CCCACCAACC CAAGCAATAC CATCCCAAGA
GCGACCCTGA ACCGCGCATT CCTCTTCTCG GACGCGCAGA TCGAAGACGG CTCGTTCCTA
CGCCTCGGCT CGCTTTCGCT CGGTTACAAC TTTCCTTCCT CGTGGGTGAG CAAGGCGGGT
ATCAGCAATG CAAAGCTGTA CGTGTCGGCG CAAAACCTGT TTGTGATCAC CAAATACACC
GGCTTCGACC CGGAGACGAA CCAGTCGGGG CAGAACAACA TCCTGCGCGG AATCGACTCC
GATTCTTATC CCAACTCGCG GTCGTTCCTG GTGGGCGTAA ACCTTAGTTT CTAA
|
|---|
| Protein sequence | MIETLTLKPL KHLPGRAAIL LLLAAAPAAT FATAPNITAT RQKQDRTVSG VVKDQKGEPI
PGINILIKNS VTGTSTDSQG KYSIKADAEA ILVFSGIGFV TREVAVNNQS SIDISLQEDT
RQLNELVVVG YGTQKKSDLT GSVSSISEAQ FKKTPVASLD NGLRGRAAGV QVTSTSNQPG
GATSIRIRGS NSVNTGSEPL YVIDGFPVFN DNAATAGGAT VGPKLNALSL INPNDIVSIE
VLKDASAAAI YGARGANGVV LVTTKKGQEG RMKIDINAYY GVQQVSKKLP LLNATEYAQL
VNDANGKEIY TQEQIASFGK GTDWQDEIFR SAPVQNYQVT ASGGDAKTKY SLSLNYFDQA
GIIINSDFKR YSGRFNFEKQ ATSRLSLGAN LSIANTNANQ ALSSTGGGEG TQGVIVSALD
FNPILKPRNA DGTYVLENDR GIPIGNPVAT ALELTNKSAT TRFLGNVFAA YKIIDGLEFR
TSIGADITST GEKYYAPRTI LAGSAAQGIG RVSTSNGTSW LNENTLTFNK TFGKHAVTAL
AGFSAQKYTR NLLTSSASGF VNDLLGADNL ESGAIIRTPV TNTNDWSLIS YIGRINYGFN
DKYLLTLTGR ADGSSKFGNN NKYGFFPSGS VAWKLSEEEF IKDINAITEL KLRLSYGRIG
NQEINSYQSL AGLTGASYII GDKVVKGFAP NNIPNPNLKW ETTTQTDLGV DLGLFRNRLN
LTFDAYYKKT TDMLLNINVP WSTGFASALQ NIGSIENKGI ELGIQAVVLD KDLKWNINFN
VAANKNKVLD LGPVSQILTG EINGYLKISD PVVIVPGQPL NSFYGYVSDG IFQTGDDIAG
GAQKTAVPGD RKYKDLNGDG VLDAKDRTFI GNAQPKFFGG FTNDFSYKGF DLSASFNYVV
GNKILNSTRA DLDLPTGQKN SSARVKDRWT PTNPSNTIPR ATLNRAFLFS DAQIEDGSFL
RLGSLSLGYN FPSSWVSKAG ISNAKLYVSA QNLFVITKYT GFDPETNQSG QNNILRGIDS
DSYPNSRSFL VGVNLSF
|
|---|
| |