Gene Dfer_2220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2220 
Symbol 
ID8225792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2722132 
End bp2723250 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content57% 
IMG OID644930056 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003086607 
Protein GI255035986 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.123621 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCGA AAAAGCATAG CACCTTGGAC CACGCATTGG ACAACTACTC GACGGCCGAT 
TTTCTGCTCT CAGACCATTT CGTTAACCAC CAGTTGGAGC CGACTCCGGA GACGGCGCTG
TTGTGGGAAA CGTGGCTGGC CGGTAACCCG CCGAATCGCC ATGAATGGGA CAGGGCCGTT
TACCTGCTGG AATCCATCCG CCTCGGATTG AGCCACTACG CGGGGCAAGT CATTTCCGAA
GAGGCAATCG AGGCGCTTCT GGCCAGAATC CGCGAAACCA ACCGTCAGTA TTCGGTTCCT
GTAAGGAGCA TTGGCCGCGT GCGGTGGATG GCCGCGGCGG TGGTGCTGGT ACTGAGCGGC
TTGCTGGCCT ACTGGTGGCA CGGCCGGCAC GATTCCGAAA GCTATTACGC GGAACGAATG
GCCGGTTTGC AAAGCAAATA CACCGAGCGG GTCAACCGGA GCCGCGCCGT CGAAACAATC
GTACTATCCG ACAGTTCCGT GGTGCGGCTT GCACCGGGCA GCCGGATCAG CTTTAATCCT
TCCTGGGATG GCGCTTCCAG GGTGGTATAC CTTTCCGGCG AAGCGGATTT CGAAGTCACG
CGGGACATCC GCAAGCCTTT TCTGGTGTAT GCCAACGAGG TGGTGACCCG CGTATTGGGC
ACGCAATTTA CCGTGCGGGC CTTCGATGCA GAGGGCAAGG TGCTGGTCAA TGTGAAGTCC
GGGCAGGTGT CGGTTTCGAA AGATGATGTG CCCGAAAAGG GTAATGTGCA GGATGCAAGC
GGATTACTGC TGCTCCCCAA CCAGCAAGCT GTCTTCTCGC GCCGGTCCGA GGAGTTCAGC
AAGTCGATCG TCTCCGAACC GCGGGTGATC GGTGTTGAGA ATGAGATGCC TTCATTCGAA
TACGACGCCG TGCCGGTAAC CCGGGTGATC GGGGATTTGG AAAAAGCCTA CGGCATTTCC
ATTCTGTACA ACCGGGAACA GTTGAAGAAT TGCGAGCTCA GCGCCTCGCT CAAAACCGAA
ACATTTGAAG AGAAACTGCG GGTCATTTGC ACGACCATCA ATGCGGATTA CCAGAAGCTC
GACGGCCAGG TAGTCATTCA TGGAGGCGAA TGCCGATAA
 
Protein sequence
MNAKKHSTLD HALDNYSTAD FLLSDHFVNH QLEPTPETAL LWETWLAGNP PNRHEWDRAV 
YLLESIRLGL SHYAGQVISE EAIEALLARI RETNRQYSVP VRSIGRVRWM AAAVVLVLSG
LLAYWWHGRH DSESYYAERM AGLQSKYTER VNRSRAVETI VLSDSSVVRL APGSRISFNP
SWDGASRVVY LSGEADFEVT RDIRKPFLVY ANEVVTRVLG TQFTVRAFDA EGKVLVNVKS
GQVSVSKDDV PEKGNVQDAS GLLLLPNQQA VFSRRSEEFS KSIVSEPRVI GVENEMPSFE
YDAVPVTRVI GDLEKAYGIS ILYNREQLKN CELSASLKTE TFEEKLRVIC TTINADYQKL
DGQVVIHGGE CR