| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2175 |
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| Symbol | |
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| ID | 8225747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 2660704 |
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| End bp | 2662152 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644930012 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003086563 |
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| Protein GI | 255035942 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.388686 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGTTT TATTTAGAAT TAACATCATG AAAAATACAT TTAGATTAAC GCAAATACCC
GTTCTGATTC TGCTGGTAAC TTTGCTCGCC TCTTGCAAGG TGAGCAAGGA CTACCAGCGC
CCGGAACTGG CCCTGCCCAC CGAGTACCGC AATGTGCCTT ACGGCGACAC CGCCACCATC
GCAGATATGG GCTTCAAGGA ATTTTTCCCC GATACGACGC TGCAAAGGCT CATCGAGCGC
GGCATTGCTT ATAACTACGA CCTGCAAATC GCGCTGAAGC GCATTGATAT CGCACAGCAG
CAGGTAAAAC AGGCCAGGAT GCTGCAACTT CCGCGCGTAG ATTTGCGCAT TGCGGGCACC
TATAACCGGC CATCGAGCAA CAGCTTGAAC GGGATCAGCG CGAGTAGCTT CCTAAAATCG
AGCCATATCG AGAACTATAT CACCTCGGTG GACCTGTCGT GGGAAGCCGA TATATGGGGT
AAGATCCGCC GCCAGCAGCA GGCTACGTTG GGCCAATACC TGCAAACGGT GGAAGCCACC
AAAGCCGTGC AAACGCGCCT CGTGGCCGAC ATCGCGAGAG GTTTTTTCAA CCTGCTAATG
CTCGACAAAC AGCTCGAAGT GGCGAAACAC AACCTCGAAC TGAGCAATAA CACCTTGAAA
CTGACGAACC TGCTCAAAGA TGCGGGCGAG GCAACGTCGC TATCGGTGCA GCAGGCGGAA
GCACAGCGCG AGGCCATTGC ATTGCTCATC CCGCAGCTCG AACAGGACAT TACGATCCAG
GAAAACGCAC TGCAAATCCT GACCGGCCAA ATGCCGAATG CCGTCGATCG GAAGGTAAAA
CTGGCCGATT TCCAGGCAAA CGACAGCCTT GCCACCGGCG TGCCGGCTGC ATTGGTAAGT
CGCCGTCCCG ATGTGCGTGC GGCGGAAATG TCGGTGCTCA TCGCGAATGC AGAGCTGGGC
GTGGCGCAGG CGAGCATGTA CCCGTCGCTG ATCATTTCGG CGAGCGGCGG TATCGAATCG
TTCAAATCGA GCAACTGGTT CAACATTCCC GGTTCGCTGT TCGGCATTGC GGCCGGTACG
ATTGCACGGC CGATTTTCGC CAGACGACAA TTGAAAACGA ACCTGGAAGT CGCCAAAATC
GGGCGTGAAC AATCGGTTCT GGAATTCCGC CAATCGGTGC TGAATGCCGT GGGTGAGGTT
TCGAACTCGC TGGTTCAAAC CCAGAAACTG AAAGAACAGG AAGCCATCGC GAACAATCAG
GTGAACATTT TGCAGCAGGC CATTTCCAAT GCGCAGCTGC TGTACCAAAG CGATATGGCT
AATTACCTGG AAGTGATTAC GGCGCAAGGC AATGCATTGC AGGCCGAACT GAACCTCGCA
TTCATCCGCA GCCAGTCGCT CGTAGCGCGC GTAGACCTCT ACCGCAGCCT GGGCGGCGGC
TGGAAATAG
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| Protein sequence | MTVLFRINIM KNTFRLTQIP VLILLVTLLA SCKVSKDYQR PELALPTEYR NVPYGDTATI
ADMGFKEFFP DTTLQRLIER GIAYNYDLQI ALKRIDIAQQ QVKQARMLQL PRVDLRIAGT
YNRPSSNSLN GISASSFLKS SHIENYITSV DLSWEADIWG KIRRQQQATL GQYLQTVEAT
KAVQTRLVAD IARGFFNLLM LDKQLEVAKH NLELSNNTLK LTNLLKDAGE ATSLSVQQAE
AQREAIALLI PQLEQDITIQ ENALQILTGQ MPNAVDRKVK LADFQANDSL ATGVPAALVS
RRPDVRAAEM SVLIANAELG VAQASMYPSL IISASGGIES FKSSNWFNIP GSLFGIAAGT
IARPIFARRQ LKTNLEVAKI GREQSVLEFR QSVLNAVGEV SNSLVQTQKL KEQEAIANNQ
VNILQQAISN AQLLYQSDMA NYLEVITAQG NALQAELNLA FIRSQSLVAR VDLYRSLGGG
WK
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