| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2020 |
|---|
| Symbol | |
|---|
| ID | 8225592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2462194 |
|---|
| End bp | 2463294 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644929857 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_003086408 |
|---|
| Protein GI | 255035787 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTA ACAACACCAC CGAAGAAGCA CCGAAAAAGA AAAACAACCG CTTCCTCATT
ATCCTGGCCG TGCTCATTAT TGGCGGCGGC ACCTGGGGAT TTACTAAATA CAACCACGGC
CTGCACCACG AAGAGACCGA CGACGCGCAG ATCGACTCGG ACATCAGTCC GGTAATACCA
CGGATTTCGG GCTACGTGAC CGAAATTCGT GTAAAGGATA ACCAAACCGT GAAAAAAGGC
GATACGTTGA TCGTCCTCGA TAACCGCGAC CAGATCATTA AACTGGAACA GGCCAAAGCA
GGATTGCTGG GATCGCAGGG CAGCCTGACG GTGGCAAACG AAACCACCAA TGCATCGGCA
GCCAGCGGCA TTACCTACGA AGCGAACATT GCCGTGGTAG CCGCGCAGAT CGAAGAGGCA
AAAGTGAACC TTTGGCGGGC CAATCAGGAT TTCGCACGGT ACGAAAACCT GATCAAAGAC
CATTCGATCA CGCAGCAGGA ATTTGAACAG GCGCAAGCGA CCAAACAAAA AGCCGAACGC
GCATTGGCGG TTTTGGTAGC ACAAAAAGGT GCCGCCGAAC GTCAGGCGAA AGCAGCCGGT
CGTCAAACCA AAGCGACCTC GGTGCAAACC GCCGTGGCGA ATGCGAACAT CAAGGCGCGC
CAGGCCGAAA TCGCGAACGC GGAGCTGAAC CTGTCGTACA CCGTGATCAC CGCACCGACA
GACGGCCGCG TATCGAAAGT GAATGCGCAG CTGGGCCAGT TCCTGCAAGC CGGACAATCG
CTTTTCAGCA TTATTTCTAC CCACAAGCCC TGGGTAACGG CAAACTTCAA GGAAACGCAA
CTGACGAAAA TGAAAATCGG CCAGCACGTG AAAATCCACG TGGACGCTTA TCCTGAACAC
GAATTTGAAG CGCAGGTAGC ATCATTCTCG CCAGCCACGG GTGCACGTTT CGCGCTGCTG
CCGCCGGATA ACGCGAGCGG TAACTTCGTG AAAGTGGTAC AACGCCTCCC GGTCCGCATT
GAATTTACCA AGGCTGACGA CGAAAAGATC GCGCAGCTGC GCCCAGGGAT GAACGTGTTC
GTCGATGTGG AACTGAACTA A
|
|---|
| Protein sequence | METNNTTEEA PKKKNNRFLI ILAVLIIGGG TWGFTKYNHG LHHEETDDAQ IDSDISPVIP
RISGYVTEIR VKDNQTVKKG DTLIVLDNRD QIIKLEQAKA GLLGSQGSLT VANETTNASA
ASGITYEANI AVVAAQIEEA KVNLWRANQD FARYENLIKD HSITQQEFEQ AQATKQKAER
ALAVLVAQKG AAERQAKAAG RQTKATSVQT AVANANIKAR QAEIANAELN LSYTVITAPT
DGRVSKVNAQ LGQFLQAGQS LFSIISTHKP WVTANFKETQ LTKMKIGQHV KIHVDAYPEH
EFEAQVASFS PATGARFALL PPDNASGNFV KVVQRLPVRI EFTKADDEKI AQLRPGMNVF
VDVELN
|
|---|
| |