Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1804 |
Symbol | |
ID | 8225375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 2220309 |
End bp | 2222717 |
Gene Length | 2409 bp |
Protein Length | 802 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644929656 |
Product | protein of unknown function DUF214 |
Protein accession | YP_003086208 |
Protein GI | 255035587 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCAAAA ACTACCTTAA AATTGCCTGG CGTAATCTGA TTGGCAATAA GACTTATTCC GCCATCAACA TTGGCGGGCT TGCAATGGGC ATGACGGTAG CTATGCTGAT AGGTTTATGG ATTTATGATG AGCTTTCTTT TAATAAATAC CACACCCATT ACAGGCATAT TGCCCGCGTG GTGCAGCAAC AGACCTTGGA TGGCGAAATA AATACAGGCA ACAATGTCCC CGCACCGCTA TTTGAAGCGC TGCAAACCGA TTTTGAAAAG GACTTCGACC GTGTGGTGAT CACCTCGTGG CTTCAACGAT ATACACTCAC CTACAAAACG TCGAGCTTTA CAAGGCCGGG CAACTTCATG TCTTTGGGTG CCGCGGAAAT GCTCTCCCTG AAAATGGTTC ACGGAAGCGC ATCGTGTCTC AAAGACCCGG CTACCATTTT GCTCTCTGAA TCTGTCGCCA GGGCAATCTT CGAGCATGCC GATCCTGTGG ACAAGATGAT CAAAATCAAT AAGGATCTGA ATGTTAAAGT AGTGGGCGTT TACGAAGACA TTCCCTACAA TTCCGAATTT CACGAGCTCG GTTTCATCGC TCCATTCGAT TTGTATGCCG CATCTACGGA GTGGGTAAGG GACGCCATCA ACGACAGAGA TTGGGAAAGC AGTTCTTTTC AGATTTTAGT GCAGCTTTCC AAAAACAGTG ATCCCGGTAT GGTTTCCGCA AAGATCAGGG ACTTGAAACT GGGCAAAGTG GATGAAAACG GGCGCAAATT CAAGCCCCGG ATCATTTTGC ACCCTATGAG TCGCTGGCAC TTGTATTCCG AATGGCTCAA CGGACAAAAC ACAACCGGCA GAATTGATTA CGTCTGGTTA TTCGGCATTA CAGGCATATT TGTACTGCTA TTGGCTTGTA TTAATTTCAT GAACCTGAGC ACCGCGCGGT CGCAAAAGCG GGCGCGGGAA GTAGGCATAA GAAAAGCCAT AGGTTCGGTG CGGATGCAGC TGGTAAGTCA GTTTTTCAGT GAGTCGTTCC TGGTTGTCTT CCCGGCATTT GTAATTTCTC TCGCCCTTAC CTGGCTTCTA CTACCCACAT TCAATGAAAT TGCTGAAAAG GAAATGGCAT TTCCCTGGCT AAATCCTGTT TTCTGGGCTT GCGGATTATT GTTTACTCTG CTAACCGGTT TTATTGCGGG TAGTTACCCG GCATTCTACT TGTCTTCTTT TCAGCCGATC AAAGCACTGA AAGGTAAATG GGCCCCCTCC GGCCTGCGCG CAACGCTGCC AAGAAAAGTC CTGCTCATCA TCCAGTTTAC AGTCTCCATT ACACTCATTA TCGGTACTGT TGTAGTTTAC AAGCAGATCC TGCACGCCAA AAACCGGCCC ATCGGTTATA AGAGGCAAGG TCTGGTGACC ATGCTCGTCA CGAATGAAGC CATCCACACG CATTTCGACG CTGTGTTGGA CGACTTGTTA AAAACAGGCA CCGTGACATC GATGGCAGAG TCGGCGGCTC CTCTCACAGA AGTATTTTCG GCCAATGTAG GCTTCCACTG GAAAGGCAAA GACCCCGGCT TGCATTCTGA GTTTGCGACC ATCGGGATTT CTCATGATTT TGGGAAAACC GTGGGATGGG ACTTTGCGGC AGGCCGGGAT TTCAGCAGGT CTTTCGCAAC GGATTCCGCG GGATTTGTGA TCAACAAGGC CGCGGCCCAA TTCATGGGTT TAGGAAAAGA GGATTTAAAT AACGCCATCG GCGAAACCGT CACCTGGGAT GGACGGGCAT TTAAGATCAT CGGCGTAATT GACGATATGA TTATGGAATC GCCTTATGAA CCGGTTCGGA AATCCATTTT CTTTATCCAT CCGAATGGAG GACGGTTTGT AACAGTGCGC CTTAACCCTT CCACGCATAC CAGCCAGGCA ATAGGGCAAT TAGAAGCAGT TTTCAAAAAA TACAATCCGG ATTCACCCTT CAATTATCAG TTTGTCGATC AGCAATATGC AGCCAAATTT GCCTCCGAGG AAAAGGTCAG TAGTCTGGCG GCAGTGTTCA CCTGCCTGGC TATCTTCATC AGTTGTCTCG GCCTTTTTGG ACTGGCGTCC TTTATGGCAG AACAACGCAC GAAGGAACTT GGTATTAGAA AAGTGCTGGG TGCATCCGTA GCCAGCTTAT GGCAGCTGCT GTGTTCTGAT TTTGTGGTTT TGGTACTAGT ATCCTGTGCG CTGGCAACGC CCGTTGCCTG GTTCCTTATG GATCGCTGGT TAGAAAAATA CAGTTACCAT ACACCCATTT CCTGGTGGAT ATTTGCGCTT ACCAGCGTGG GAACGCTCGC AATCGCCCTT GCTACCGTCA CCTTTCAAGC GATTCGGGCG GCGCTGCTGA ATCCGGTGAA AAGCTTGCGC AGCGAGTAG
|
Protein sequence | MIKNYLKIAW RNLIGNKTYS AINIGGLAMG MTVAMLIGLW IYDELSFNKY HTHYRHIARV VQQQTLDGEI NTGNNVPAPL FEALQTDFEK DFDRVVITSW LQRYTLTYKT SSFTRPGNFM SLGAAEMLSL KMVHGSASCL KDPATILLSE SVARAIFEHA DPVDKMIKIN KDLNVKVVGV YEDIPYNSEF HELGFIAPFD LYAASTEWVR DAINDRDWES SSFQILVQLS KNSDPGMVSA KIRDLKLGKV DENGRKFKPR IILHPMSRWH LYSEWLNGQN TTGRIDYVWL FGITGIFVLL LACINFMNLS TARSQKRARE VGIRKAIGSV RMQLVSQFFS ESFLVVFPAF VISLALTWLL LPTFNEIAEK EMAFPWLNPV FWACGLLFTL LTGFIAGSYP AFYLSSFQPI KALKGKWAPS GLRATLPRKV LLIIQFTVSI TLIIGTVVVY KQILHAKNRP IGYKRQGLVT MLVTNEAIHT HFDAVLDDLL KTGTVTSMAE SAAPLTEVFS ANVGFHWKGK DPGLHSEFAT IGISHDFGKT VGWDFAAGRD FSRSFATDSA GFVINKAAAQ FMGLGKEDLN NAIGETVTWD GRAFKIIGVI DDMIMESPYE PVRKSIFFIH PNGGRFVTVR LNPSTHTSQA IGQLEAVFKK YNPDSPFNYQ FVDQQYAAKF ASEEKVSSLA AVFTCLAIFI SCLGLFGLAS FMAEQRTKEL GIRKVLGASV ASLWQLLCSD FVVLVLVSCA LATPVAWFLM DRWLEKYSYH TPISWWIFAL TSVGTLAIAL ATVTFQAIRA ALLNPVKSLR SE
|
| |