Gene Dfer_1768 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1768 
Symbol 
ID8225339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2172898 
End bp2173494 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content49% 
IMG OID644929622 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003086174 
Protein GI255035553 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.433786 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTCAC AAGTCGAGAC AGATGAAAAT GCATTGAGCC GGCAATTGAA AAACGGCGAC 
CATGCTGCGT TTCAGGCAAT ATACGACCGG TTCAAACGGC CCCTGCTTGC ACACATTCTA
TATGTTGTCA AATCACCTGA CCTTGCTGAG GAGGTCTTGC AGGATCTTTT CGTGAAGGTT
TGGCAAAACC GCGCCAGTAT CGATCCGGAC AAATCTTTCA AAGGCTATTT GATTACCATC
AGCAGCAACC TCATTTACGA TATGTTCCGC AAAGTGGCGC GCGACCGGCG ATTGCGCGAG
CATTTCATGG CATCATTCGA GGATACGTAC GTGATCGATG ATCCGGGGAA CGTGGAAAGC
GAGTTTTCTG AGCTTCATCA GGCGCTTGCC CTGCTGCCTC CACAGCGCCG CCGCGTGGTG
GTGATGTGCA AGCTGGAAGA AAAGTCGTAC CGGGAAGTGA GCGAAATCCT GAACATCTCC
ACCGCCACCG TCAATGACCA TATCCGGCAG GCCAATATTT TCCTTAAAAA ACACTTCCGC
ATATTTCAGC ATGTGGTCGT GATAATTACT TCACTTCAAG CAATATTTTC CAGGTAG
 
Protein sequence
MDSQVETDEN ALSRQLKNGD HAAFQAIYDR FKRPLLAHIL YVVKSPDLAE EVLQDLFVKV 
WQNRASIDPD KSFKGYLITI SSNLIYDMFR KVARDRRLRE HFMASFEDTY VIDDPGNVES
EFSELHQALA LLPPQRRRVV VMCKLEEKSY REVSEILNIS TATVNDHIRQ ANIFLKKHFR
IFQHVVVIIT SLQAIFSR