| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1744 |
|---|
| Symbol | |
|---|
| ID | 8225315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2129068 |
|---|
| End bp | 2132346 |
|---|
| Gene Length | 3279 bp |
|---|
| Protein Length | 1092 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644929598 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003086150 |
|---|
| Protein GI | 255035529 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.196303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATAA AGTTCTACCA TTTTTTTCTC GCGCTGATCC TGGGATCAAT GGCGTCGGGC
ATTGTTTGCG GGCAAAATAT CAGGGAGGTA ACCGTCTCGT TCGAGATCCG TCGCGCCACT
TTGAAAACCG CATTGAAAAA GCTCGAAAAA ACAACCGGTT ACACGATCGC CTATCCGTCG
GAAAAGGTAG GGAAGGTCAG GTCCGTAACC GTGCCGCCGG GAAAGCGCAC GATCGAGCAG
ACGATGCTTT TAATGCTGGA ACGGACAGAC CTTCAATTCA GGCAGGCAGG CCGTAACATT
ATTCTTTTCG AAAAATTGGA AAACATCCCT AAAACCGAAC AGGCCGAAAA GCCGCAATCG
TTCCTGATCC GCGGCAGGGT GATGGCCTTG CAGGAAGGCG GCCCGCTGGA AGGCGCGACG
GTGCTGCTCA AAAACGCCGA CGAGGGGGCC GTTACCGACG AGGCCGGGCG GTTCACATTG
CGGGCCACGG GCAGCGGTGC ATCCATTGTG GTTTCGTTTA TAGGATACCG TTCGTTGGAT
ACATTACTTT CATTTCCGAT CGAAGGCGAG CTTACCCTGA ATTTACGCCG CGACATCACG
CAGTTGCAGG AGTTGGTGGT CTCTACCGGC TACTACGAAA GCTCGCGCAG CATGAGCACC
GGTAATATCG CGCAGGTATC GCGTAAGGTG ATCGAAAAGC AGCCCGTCGC CAGCCCGATA
GCGGCATTGC AGGGAAGGAT ACCGGGCGTG TTTATCAGCA ATGGAACGGG CGTTCCCGGT
TCGGCGGTGC ATATCCAGAT CCGCGGACGC AATACCATCG ACTCCGGCAA AACACCGCTG
GTGCTGATCG ACGGCGTGCC CGTTCCCTAC GAATCGCCCA ATTTGCTCAC GGGCTCGCAT
GGCATGGAAT CGTACGGAGG CGGGCCCAAC CCGCTCAATG CGATCAATCC GGCGGATATA
GAGCGCATTG AAATCCTGAA AGACGCCGAC GCCACGGCCA TTTACGGTTC CAGGGGCGCC
AATGGCGTGG TGCTGCTCAC GACCCGAAAG GGAAGGCCCG GCGAGACGCG CGTCGACCTG
GATGTGTATT CCGGTTTTTC GAAGGTAACC CGCAAGATGG ACGTGCTCAA CACGCAGGAA
TACCTCGATC TGCGGCGCAA GGCATTTGCG CTCGACGGCA TTACTCCCAC CGACCGGAAT
GCGCCCGACC TCGTATTATG GGACCAAAAC GCGCATACCG ACTGGCAAAA AGAACTGATC
GGCAACCCGG CACCCGTGTC GAATGCGCAG CTTAACATTT CCGGCGGCAA CGACGCCACG
CGCTTCATGC TCGGAAGCAG TTTTCGGCAT GAAAAGCCGA TGCTGTCCGG CAACAACCGC
GACCGGCGGG GCAATACCCA TTTGAACGTC CAGCATGAGT CGGGCAACAA GCGGCTGAAC
CTGAGCCTGA CCATGACCTA CGGCGTTACC GACCTTGAAA CAAGGGGCAT TAACCCGCAC
GATTACCTGC TGGAAGCGCC CAATCAGCCT AAATTCGACA GCACGGGCGT GACGCCGTAC
TGGTTCGGTT CGAGTTTCAA TGCCTCGGCG CTGCGGTACC AGCAATGGCG CATGCGCTCC
GACAACTTCA TTGGCAGCGC ATTGCTGCAA TACCGGCTTT CGGACCACCT GACTCTTGTT
CTCAGCGGAG GTTACACGCG CATCAACGAC CGGCAAGTGC TCAAAAACCC CTCGACCTAC
ATTAATCCCT CGATGTCGTA CGGCTTCAAA AACCAAGCGA GCTTTGCGAA CGGGCAGCGG
TGGACCTACA ATATCGAGCC GCGTATCCGG TTCAGGCGCG CGGTGGGGGC GGGGGTGTTG
TCGGCGCTCG CGGGCGCTAC ATTCCAGCAG AGCGTGAAAA GCAGCCAGCA GATTTCGGCA
CAGGACTTTC CGATGGAGGC ATTGATGGAT AACCTGGCTT CGGCTGCCAT TATCTCGGAC
CGGCGCTCTG CATTCAGCGA TTACCGGTAT CACTCCATTC TCGGGCACGC GTCGTATGCG
TGGGAGGATA AATACATCTT GAATGGAACC TACCGGGTGG ATGGCTCGTC CCGTTTCGGC
GAAGGCAGGC GATTTGGTGG TTTCGGGGCG ATGGGCGTGG CCTGGATATT CTCGCGGGAA
GCCTGGGTGA GCGAGGCATT GCCGTTTGTC ACATTCGGTA AACTCAGGGC CAGCTATGGC
ACCACCGGCA ACGACCAGAT CGGCGATTAC CGGTACCTGG AAACCTACAT GGCTTCGAAG
ACACCGTACA TGAACAAGTC GGGCCTCACG CCCAACCGCC TGCCCAACCC GGATTACAGC
TGGGAGGTGA GCCGGAAAGC CGAAGCAGGG CTTGAACTGG CATTTCTGAA CGGCAGCTTG
CAGGTGCATG CGTCGGCATT CATGAGCCGG TCGAGCAACC AGCTGGTAAA TTTCCCCGTG
GCGAGCCAAA CGGGTTTTTC CTTCTACCAG GCCAATCTGG ATGCATTGAT TGAAAACAAG
GGACTGGAAT TTGAGTTGCA TGCCAAAATC GCCGAACGGA ACAGGTTCCG CTGGGAAGCC
GGATTTAACC TCACGACATT TAAAAACACG CTGCTGCGCT TTCCCGGCCT GGCGTCGTCA
TCCTACGCCA GCCGATACGA GATCGGCGAG TCGGTGAATG TGGTGAGGGG CTACCGGTTC
ACCGGCGTGA ACCCGGAAAG CGGAATGGCT ATGGTGGAGG ACCTCAACCG GGATGGCGCC
TACAACCCCG GAAACGATTT TCAGGCCCTG GGCAACCTTG ATCCCCGGTT TTTCGGAGGA
TTCAGCAACA CTTTCCGGTA TAGCAACTTT GAGCTGGATC TTTTCTTTGA TTTTATACGA
AAACCCCTGG AATACGGCTA TCTGGATGTA TTTCCGTCGC CGATCGGTGG AAGAGCCAAC
GTGAAGAGAA GCTGGGCAAC CGACTATTGG ACAGAGCCCG GGCAAAATGC ATTGAGGCCC
CGGCCCACCA GCTCCGCCAC CGGCAGAAAT TATTTCGACG TTTACGGCAA TTCCGACGTT
GCCTTTGAAG ATGCCTCCTA CATGCGCCTG CGCAATGCCG CGCTGTCCTA CAATCTGCCG
GTTAGGTTGA AAAAGTATCT CAAACTGCGG GACATGAAAG TTTACGTACA CGGACAAAAC
CTGCTGACTT TCACCCGCTA TGGCGGCTTC GATCCGGAAA CGCCGCGGCT CGCCCCGCCA
TTGAAAACGA TCGTAGCCGG CATCAGACTG ACCCTTTGA
|
|---|
| Protein sequence | MTIKFYHFFL ALILGSMASG IVCGQNIREV TVSFEIRRAT LKTALKKLEK TTGYTIAYPS
EKVGKVRSVT VPPGKRTIEQ TMLLMLERTD LQFRQAGRNI ILFEKLENIP KTEQAEKPQS
FLIRGRVMAL QEGGPLEGAT VLLKNADEGA VTDEAGRFTL RATGSGASIV VSFIGYRSLD
TLLSFPIEGE LTLNLRRDIT QLQELVVSTG YYESSRSMST GNIAQVSRKV IEKQPVASPI
AALQGRIPGV FISNGTGVPG SAVHIQIRGR NTIDSGKTPL VLIDGVPVPY ESPNLLTGSH
GMESYGGGPN PLNAINPADI ERIEILKDAD ATAIYGSRGA NGVVLLTTRK GRPGETRVDL
DVYSGFSKVT RKMDVLNTQE YLDLRRKAFA LDGITPTDRN APDLVLWDQN AHTDWQKELI
GNPAPVSNAQ LNISGGNDAT RFMLGSSFRH EKPMLSGNNR DRRGNTHLNV QHESGNKRLN
LSLTMTYGVT DLETRGINPH DYLLEAPNQP KFDSTGVTPY WFGSSFNASA LRYQQWRMRS
DNFIGSALLQ YRLSDHLTLV LSGGYTRIND RQVLKNPSTY INPSMSYGFK NQASFANGQR
WTYNIEPRIR FRRAVGAGVL SALAGATFQQ SVKSSQQISA QDFPMEALMD NLASAAIISD
RRSAFSDYRY HSILGHASYA WEDKYILNGT YRVDGSSRFG EGRRFGGFGA MGVAWIFSRE
AWVSEALPFV TFGKLRASYG TTGNDQIGDY RYLETYMASK TPYMNKSGLT PNRLPNPDYS
WEVSRKAEAG LELAFLNGSL QVHASAFMSR SSNQLVNFPV ASQTGFSFYQ ANLDALIENK
GLEFELHAKI AERNRFRWEA GFNLTTFKNT LLRFPGLASS SYASRYEIGE SVNVVRGYRF
TGVNPESGMA MVEDLNRDGA YNPGNDFQAL GNLDPRFFGG FSNTFRYSNF ELDLFFDFIR
KPLEYGYLDV FPSPIGGRAN VKRSWATDYW TEPGQNALRP RPTSSATGRN YFDVYGNSDV
AFEDASYMRL RNAALSYNLP VRLKKYLKLR DMKVYVHGQN LLTFTRYGGF DPETPRLAPP
LKTIVAGIRL TL
|
|---|
| |