Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1565 |
Symbol | |
ID | 8225136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1870835 |
End bp | 1874263 |
Gene Length | 3429 bp |
Protein Length | 1142 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644929422 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003085974 |
Protein GI | 255035353 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCGT TACAACAATT CCTCCTAATG ATTGTCATCA CCCAGCTGGC AATGGCCGGA CCGTCGTCGG GCCAGAACCT GCTGGAAAGA AGGGTTACGC TCAATCTGAA CCGCACTACG CTGGGCAGCG CGTTACAGCA GCTGGAAAAA ACAGCCGAGA TTAAATTTTC CTACAACTCG CGCATGCTGC CGCTGAAATT TACAGTGAGC CTCAATGCGC AGAACGAGCC GCTCGCAACC GTGCTCGACA AGCTGCTGCT GCCCAACAAG ATCAGCTACA AGCAGGTAAG CAACCGCATT GTCCTCCGCA GCCAGCCCGA GGTGATCAAT GCCGCCGAAC CGGCACCCGA GGGCCCGAAG TACGCAACGG TGGTAGACGA CCGCTCGCTG GTGGGGAAGG TGTCCGGCGA TAACGGCGAA GGCTTGCCGG GCGTCAATAT CGTGATCAAA GGCAGCCAGC GCGGGGCCGT CACCAATGCA GACGGTAGTT ACAGCCTCCT CGTACCCGAG GGCAGCCAAA CGGTCGTGTT TTCGTCGGTA GGGTATATTT CGCAGGAAAT CGTCGTCGCG ACCGACCGTA CCGCGCTGGA CGTGACCCTG AAAGTGGATG AAAAAGCCCT GGAAGAGGTG GTTGTGGTGG GCTATGGTAC CCAAAAGAAA GTGAACCTTA CCGGCTCGGT ATCCACGGTG AATGTGGACA ATATGCAAAG CCGCCAGGTG AGCAACAGCC TTGCCGCATT GCAGGGACAG GTGACGGGAC TTCGCATCAG CCAGGGTACT GGTATGCCCG GCCGTGAAAG CGTGTCGCTC ACCCTCCGCG GGGCCAGCTC ATGGGGTACC AACACCAGTC CGCTGGTGCT GGTAGACGGT GTCGTAGGCT CGCTGGACGT GCTTCCGATG TCGGATATTG AAAGCATTTC AGTGCTGAAA GATGCGGCGT CCGCTTCCAT TTACGGCGCG CGCGCTGCCA ATGGCGTAAT CCTCGTGACT ACCAAGCAGG GCAAAAAGGG CAAGCCGACA TTGACCTACA ATATGTCGCT CCGCACGCAG TCACCCACCG GCGTGCCGAA TCAGATCTGG AATTCGGGGC AATACATGGA GCTTTTCAAC AAAGCGGTTG CCCGGAATGC CGTGAGCGCG GTGCCGTTCC CGCAGGCGCT GATCGACAAG TACACCGATC CCAACCGGAA CAAGGACCAG TTTCCCGACT ACAACTGGGC CGATGCCGTC TGGAAATCGG CACCAATGCA GGAGCACAAT GTGGGCGTAA ATGGTGGTTC CGATGCATTT AAATACAATA TATCCGCCGG CATGATCGAC CAGAAAGGGG TGCTGCTGGG GCACAGGTAC AAGCGTTTCA ATGGTTTGGC CAACCTTTCG ACCACGATCA ACAAATACAT TACAGTGGGT ACGAACGTGA GCTACATGAA AGGCAATTCG CTTTCGCCCT ACTACGAAAA TCAGAACTTC GTGCTCATGA CGATGACCCA GTCGCCGCTC GTGAAGCCGT ACCTGCCCGA CGGAAGCGGC CGGTATACCG ACAAGGCCGT GCCCACCGGC GTAGGCGGTT CGCAGAACAA CCGCAACCCG TTCTGGATCG CTAACGAAAC GTATAGGGAT TACGACGACT GGCAGGCCAA CGTGCAGGGC TGGCTCGATG TGAACTTCCT GCAAACCGAA AAAATGGGAC TTAAATGGAG CTCCAAATAT GCCTCCCGGT TTGCCGAGCA GTTCCGCAAC ATTTACCATT ACGGCGCCGA CGCTTTTTAT TATCTGCCTG AAAACGAGTA CACTGCCGGC GGAGCCAATG TGTACCAGAA AGGTACGCCG TTCGGGCCAG AGGCATTGGG CGTAAACCAG GGCAACTTCC GCACGCTGCT CAATACGTTT TACTCGTCGC TGAACTGGAA CTGGAATCCC GGCCGGCATG ACATCGCATT GATGGTCGGA TACAGCCAGG AGGAGCAGAA ATACCGCTGG CTGGGCGGCA CGCGCAATGT GTTTCCAGTC AAAAATATGT ACGAGCTCGA TGGAATGGGA CCATTAAACC AGACTACCAC CGGCGGGCTC ACCGAATGGG CGTTCCAATC GCTTTTCGGC CGGGCTACGT ATGCATTGGC TTCGAAATAC CTGTTGGAAG CGAATTTCCG GTATGACGGC ACATCCCGCA TTTACAAAGA CAGCCGCTGG GGCTTTTTCC CGTCCGCGTC GGCCGGGTGG CGGATCAGCG AAGAGGCATT TATCCGTGAC GGGGCAAGCT GGATCGACAA CCTGAAATTG CGGGCTTCGT ACGGGCTGCT CGGTAATGCC AACATCGGTG AATACCGGGT AGGCAATACA AACCTCGGTG AATATCCCTG GCAGGATACT TATGTCGCCA CGACCTATGC TTTCAACGAA GCGCTGGGGC AGGGTGTTCA GCAAACCGCA TTCCGCAACA GGGGACTTAA ATGGGAAAAA ACGACTATTG CCGACATCGG CCTCGATTTT AACCTGAAAA GCGACCTGAT TTACGGTACG ATAGATTGGT ACAACAAGGT AACTACCGGA ATCCTGGCCG GCGCCATCAT CCCCGCCAGC GCAGGCATGT CGGCGCCGGT GATCAACTAC GGCACGCTCA GAAACTACGG CCTGGAACTG GAATTGGGAC ACAAAGGCAA ATTTGGGCAG GTTGAATACG GCATTAATGG GCAAGTATCC GTTAACCGCA ACAAGGTCAT CAAATTCCCC GCCCCCGCTT ACAGCGACCG TATCATCATG GAAGGGCTGC CGTACCGCGA CTATTACTTG TACGAATACA CCGGCCTGTT CAAATCGGAG GAGGAGCTGA AAGCCGTGGT GACACCCGGT AACCCACAGC TCGGCGACAT TAAATTCAAA GACCAGAACA ACGATGGCAA GATCGACGGC GACGACCGCA TTCGCGTGAA GGGCGCATAT CCGGGCTTCA TCTACTCTTT CGGAGGCAAT GTGCGGTGGA AAAACTTTGA CCTGGCGCTG TTCTTCCAGG GTGTGCAGGG GCAAAAAGTG AGAACATTTT TCTTTGGCGA AGATCCATTC TCGCAGGGCT CATCCCCGCA TCCCAAGTTC CTCGACGCCT ACGATCCCGT GACCAACCCC GACTCCGAAG TGCCGGCCAT TTACGGCTGG GGATATGCTC CGATGACCGG CGGAACGGCC CAGAACTCGA CTTATTTCCT CAAAGACGCG TCCTACCTGC GCCTGAAAAA CGTGCAGATC GGCTACACCA TACCGACTTC CGTCACCAAA AAAGTGGGTA TCAATCATCT CAAAGTGTTC GTCACGGGAG ATAACATCCT CACATTCACC AAATACCCCG ACCTCGATCC CGAACGTGCG GGCGACGGCT GGCATGCGCA GTACCCGCAG CTGAAAGTGT ATTCCGTGGG TTTGAACCTG AGATTCTGA
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Protein sequence | MKSLQQFLLM IVITQLAMAG PSSGQNLLER RVTLNLNRTT LGSALQQLEK TAEIKFSYNS RMLPLKFTVS LNAQNEPLAT VLDKLLLPNK ISYKQVSNRI VLRSQPEVIN AAEPAPEGPK YATVVDDRSL VGKVSGDNGE GLPGVNIVIK GSQRGAVTNA DGSYSLLVPE GSQTVVFSSV GYISQEIVVA TDRTALDVTL KVDEKALEEV VVVGYGTQKK VNLTGSVSTV NVDNMQSRQV SNSLAALQGQ VTGLRISQGT GMPGRESVSL TLRGASSWGT NTSPLVLVDG VVGSLDVLPM SDIESISVLK DAASASIYGA RAANGVILVT TKQGKKGKPT LTYNMSLRTQ SPTGVPNQIW NSGQYMELFN KAVARNAVSA VPFPQALIDK YTDPNRNKDQ FPDYNWADAV WKSAPMQEHN VGVNGGSDAF KYNISAGMID QKGVLLGHRY KRFNGLANLS TTINKYITVG TNVSYMKGNS LSPYYENQNF VLMTMTQSPL VKPYLPDGSG RYTDKAVPTG VGGSQNNRNP FWIANETYRD YDDWQANVQG WLDVNFLQTE KMGLKWSSKY ASRFAEQFRN IYHYGADAFY YLPENEYTAG GANVYQKGTP FGPEALGVNQ GNFRTLLNTF YSSLNWNWNP GRHDIALMVG YSQEEQKYRW LGGTRNVFPV KNMYELDGMG PLNQTTTGGL TEWAFQSLFG RATYALASKY LLEANFRYDG TSRIYKDSRW GFFPSASAGW RISEEAFIRD GASWIDNLKL RASYGLLGNA NIGEYRVGNT NLGEYPWQDT YVATTYAFNE ALGQGVQQTA FRNRGLKWEK TTIADIGLDF NLKSDLIYGT IDWYNKVTTG ILAGAIIPAS AGMSAPVINY GTLRNYGLEL ELGHKGKFGQ VEYGINGQVS VNRNKVIKFP APAYSDRIIM EGLPYRDYYL YEYTGLFKSE EELKAVVTPG NPQLGDIKFK DQNNDGKIDG DDRIRVKGAY PGFIYSFGGN VRWKNFDLAL FFQGVQGQKV RTFFFGEDPF SQGSSPHPKF LDAYDPVTNP DSEVPAIYGW GYAPMTGGTA QNSTYFLKDA SYLRLKNVQI GYTIPTSVTK KVGINHLKVF VTGDNILTFT KYPDLDPERA GDGWHAQYPQ LKVYSVGLNL RF
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