| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1539 |
|---|
| Symbol | |
|---|
| ID | 8225110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1839509 |
|---|
| End bp | 1841923 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644929397 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_003085949 |
|---|
| Protein GI | 255035328 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATACGA TCATGTTCAA AAATTATCTG AAAATAGCGT TCCGTAACCT TAGCAAGCAC
AAGGTTTTCA GTTTTATCAA CATTTCCGGC GTATCGTTGG GCCTTACATG CTTCCTGCTC
CTTGCCCTAT ACGTCAAGGA TGAACTGGCT TACGACCGGT TTCACGAACA TGCCGACCGC
ATTTACCGGC TCAACCGCAC TTTTCTCGCT AACGATGGAA CCGAATCCTT GCGGCTCGGC
CATGCGGCGC CGCCTTTCGG ACCGCTGGTA AAGCAGGATT TTCCGCAGGT AGAACAGGTG
GTGCGCATGC TTGAAACGGG TGCATTGGTT ACATACGGTG AAAAGCGTTT CTCGGAAGAG
CAGATGTTTG CCGCCGAAGC CAATATTTTC AAAGTATTCA CTTTTAAAAC AGACCGCGGA
AATCCGGAAA AGGCGCTGGA AAACCCATTT TCGATCATGT TTTCGCGGCC GATGGCGGAA
AAGTATTTCG GCAAGGAAGA TCCCGTTGGA AAGGTGGTCC GGCTGGATAA TCAGCTCGAT
TACACGGTGA CGGGCGTGTT TGAGCCGCTT CCCCCGCAGT CGCATTTTCA TCCGAACTTC
CTCGTTTCGT TCTCATCGCT CAACGACGAC CGCGTGTACG GTGCCGAAGG GCTCCGCTCC
AACTGGGGCA ACAACTCTTT CTCGACATTC CTGCTTTTAC CCAAAAATTA CGATCCGCAA
AAGCTCACCG CCGCATTTCC GGCGTTCCAG AACAAGCATA TCGACGCGAA TGCTTCGAAA
TACTCCGTGC TGAGCCTTAC CAAACTGACC GACATTCACC TGCGCTCGCA CCTGGATTCG
GAAATCGAGG GTAATGGCGA TATTCAGTAT GTGTACCTCT TTTCGGCAAT CGCCGTTTTC
ATTCTGCTGA TCGCCTGCAT TAATTATATG AACCTCGCAA CAGCCAAATC GGCCACACGC
GCCAAGGAAG TAGGAATGCG TAAGGTGATC GGCGCGGTGC GGGCACAGCT GATCAACCAG
TTTCTGAGCG AGTCGGTGGT GCTGGTGGTG ATATCGGTTG CTTTGGCATT CCTGGCCGTG
GCGCTTTGCC TGCCATTGTT TAACAATTTT ACCCAAAAGC AACTTGCTGT CTCGGCATTG
CTCGATCCGA CTTTCCTTTT AATCCTTTTG GGAATTACCC TGTTCACCGG TCTTGCGGCG
GGCAGTTACC CTGCATTCTT CATGACAGGC TTTCAGCCGA TCGCCGTTTT GAAGGGGAGG
ATCGCTACGG CACTGAAAAA CGGCGCATTG CGGCAAACGC TCGTGGTGGC GCAGTTTGCC
ATTGCGGTGG CCCTGATCAT CAGCACTACG GTGATTTATA ATCAAATGCA TTTCATTCAG
AACTACAAGC TGGGCTATGC CAAAGACCAG ATCGTCACAT TCCGAATGCC GGATGATTCC
ACTACGGACG TGGAGGCGAT CCGCCAGCGG TTCAAGGAGC ATGCGGGCGT GCGGGAGGTA
GGGCGTTCGT CGCGCATCCC GTCCGGGCGG CTGCTCGATT CGTGGGAGGC GTACGTGATG
AAAGGCGATT CCATGGCGCC TACCGAGATC AATATCAAGT CGCTGTCGGT GGACGAAGAT
TTCATTCCCA CTTACCAGAT CCAGATGGCG GCAGGACGGA ACTTCTCTCG CCAGCATCCG
ACCGACCGTA CCAACGGCTT TATTATCAAC TCCACCGCGG CGCGCCTGCT CGGCTGGAAA
AACCCGGCCG ACGCGATCGG CAACCGCTTC GGCTACGGCC AGATGAGGGG ACAGATCATC
GGCGTGACGG CCGATTATCA TTTCGAATCG CTTCACCAGA AAGTGGCGCC GATTGTGATG
TTCTATCAGC CGGGCCGGCT GGGACGGGTG TCGGTGCATG TGGCGGGCGG AAATATCCAG
CAGGCCGTTG CGCACATCGG GTCGGTGTGG AAAGAGCGTT TCCCCGACGT ACCGTTCCAA
TACTATTTCC TGGATGAGCG TTTTGGCGAG CTTTACGCCC GCGAGCAAAC GCAGCAATTG
CTGTTCGGTA TTTTTGCAGG CATTGCCATT TTCATTTCCT GCATGGGCCT CCTCGGGCTC
TCGATGTTCA TGGCGGAATT GCGGACGAAG GAAATCGGCG TGCGCAAAGT GCTGGGCGCT
TCGGTGCCGG GCATCGTAGG GTTGCTTTCA AAGGATTTTC TCAAACCCGT TCTCATTGCG
ATCCTGATCG CCTCCCCGCT GGCCTGGTAC GGGATGAAAA ACTGGTTGCA GGACTTTGCC
TACCACACCG ATATCCAATG GTGGGTATTC GTGCTGGCCG GAATCCTGTC CGTTGCGATT
GCATTGTTTA CGGTGAGTTT CCAAAGCATC CGCGCGGCGT TGATGAACCC GGTGAAAAGT
TTGAAAAGCG AATAA
|
|---|
| Protein sequence | MHTIMFKNYL KIAFRNLSKH KVFSFINISG VSLGLTCFLL LALYVKDELA YDRFHEHADR
IYRLNRTFLA NDGTESLRLG HAAPPFGPLV KQDFPQVEQV VRMLETGALV TYGEKRFSEE
QMFAAEANIF KVFTFKTDRG NPEKALENPF SIMFSRPMAE KYFGKEDPVG KVVRLDNQLD
YTVTGVFEPL PPQSHFHPNF LVSFSSLNDD RVYGAEGLRS NWGNNSFSTF LLLPKNYDPQ
KLTAAFPAFQ NKHIDANASK YSVLSLTKLT DIHLRSHLDS EIEGNGDIQY VYLFSAIAVF
ILLIACINYM NLATAKSATR AKEVGMRKVI GAVRAQLINQ FLSESVVLVV ISVALAFLAV
ALCLPLFNNF TQKQLAVSAL LDPTFLLILL GITLFTGLAA GSYPAFFMTG FQPIAVLKGR
IATALKNGAL RQTLVVAQFA IAVALIISTT VIYNQMHFIQ NYKLGYAKDQ IVTFRMPDDS
TTDVEAIRQR FKEHAGVREV GRSSRIPSGR LLDSWEAYVM KGDSMAPTEI NIKSLSVDED
FIPTYQIQMA AGRNFSRQHP TDRTNGFIIN STAARLLGWK NPADAIGNRF GYGQMRGQII
GVTADYHFES LHQKVAPIVM FYQPGRLGRV SVHVAGGNIQ QAVAHIGSVW KERFPDVPFQ
YYFLDERFGE LYAREQTQQL LFGIFAGIAI FISCMGLLGL SMFMAELRTK EIGVRKVLGA
SVPGIVGLLS KDFLKPVLIA ILIASPLAWY GMKNWLQDFA YHTDIQWWVF VLAGILSVAI
ALFTVSFQSI RAALMNPVKS LKSE
|
|---|
| |