Gene Dfer_1495 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1495 
Symbol 
ID8225066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1784722 
End bp1785270 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content53% 
IMG OID644929354 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003085906 
Protein GI255035285 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.420653 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.312522 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTTA AATCTCTTTC GGACCAACAC CTCGTCGACG CAATGCGCCA CGACGACGGC 
ATGGCATTCC GGGAGATTTA CCAGCGCTAC TGGAAAAAAA TGTACCTGCT CGCACTCCGC
AAGGTGGACG ACCGCGAAGC AGTCGAAAGC ATCGTCCAGG ATGTGTTCCT GCGACTTTGG
GAGCGCCGCG ACCTTTTGCA GATCGACAAC CTCGAAGCCT ACCTGATCAC GTCGGTCAAA
TATTCGTGCA TCAACCATTT CAAATCGGCC ATGGTGCGCG AGAAATACAT GGCACACGCA
TTCGCCGGCT ATTCCGACTC CATTTGCTCC ACCGAAGAGC AGCTCAATGC AAGCGAGCTC
ATGCGGAACA TCGAGGAGCG CCTCAGCCAT TTTCCCGAAA AAGCCCAGAC CATCTTCCGC
CTCCACCGCC TCGAAAACCA ATCCACCCGC GAAATCGCCT CCCAAATCCA AATGCCCCAA
CGCACCGTCG AGCATCACCT AAGCTTGGTA GTGAAGGCAT TGCGGGTTTA TTTAAAGGAT
TATTTTTGA
 
Protein sequence
MNLKSLSDQH LVDAMRHDDG MAFREIYQRY WKKMYLLALR KVDDREAVES IVQDVFLRLW 
ERRDLLQIDN LEAYLITSVK YSCINHFKSA MVREKYMAHA FAGYSDSICS TEEQLNASEL
MRNIEERLSH FPEKAQTIFR LHRLENQSTR EIASQIQMPQ RTVEHHLSLV VKALRVYLKD
YF