Gene Dfer_1463 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1463 
Symbol 
ID8225034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1739854 
End bp1743210 
Gene Length3357 bp 
Protein Length1118 aa 
Translation table11 
GC content57% 
IMG OID644929322 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_003085874 
Protein GI255035253 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000390432 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0407868 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACC CGAGGGAACA AACCGCATTG GAATTTCTGG CGGGTGGTGG TGAAATGGGA 
CGGCGCATAC GGGAATTCGA TTGGTCGGCT ACTGAACTGG GGAGTCCGGG CGGCTGGCCG
CAGAGCCTGA GAACGTGTAT CCGCATCATG CTCAGCTCTA AACAGCCCAT CTGGATAGGA
TGGGGGCCCA ATTTGCTGAA ATTTTACAAC GACGCTTACA TTGATATAGT CCGGGGAAAG
CATCCGCACG CACTCGGTGA CCCGGCATCG GTGGTGTGGA AAGACATCTG GAAAGAGATA
GAACCGATGT TGTCGCGGGC AATGCAGCGC GATGAGGGCA CTTATGTGGA ATCCCGGCTG
CTGATCATGG TCCGAAGCGG TTTTCCCGAG GAAACTTATT ATACATTCTC CTACACACCC
GTGCTGGGCG ACGACGGCCG CCCAGCCGGC ATCATTTGCT ACAACACCGC CGATACCGAA
CGCATTCTCA GCGAGCGCGC GCTCAAAACC ATGCAGCAGC TCGATACGCT GGGCGAAAGG
AAGCGCGAAG GGGAGGTTTT CGCCCAGGTA GGCCGGGCAT TGTCGGCCAA CGTGCTGGAC
TTTCCTTTTG CAGTATTGTA TAAAATCTCC GAGGACGGCG AGCGCGCCGA TCTCGTGGCC
ACTTCGGGCG TGGAGGGAAC GGACAGCCGG CTCGACGCGC AAATCCGGCT ATCGGAAGAT
GCCGGGCGCT ATGTGCATTT CGCCCGCGCC GTGGAGGATA ACAAAGCCAC CGAAGCCCTC
AACCGCGGAC AATGGGAGGA TCTTGCAAGG GGCGGCTGGG ATGTAGCGCC GAAGTATGTG
GCTTACCTGC CCATCCAGTC GGCTAGCCGC AAGTATCCGC TGGCATTGCT CGCGGTGGGA
TTGAACCCCT ACCGAAAGCT GGATGAGGCC TACCGGAACT TCCTGCAACA GATCGCCGAC
CGCATTGCGC TGGGCCTCGG CAATGTGATG GCCTACGAAG AAGAACAGCG GCGGCTGCGT
GCGCTGGAAG AGCTGGACAA GGCCAAGACC TTGTTTTTTA CCAATATCAG CCACGAGTTC
CGCACGCCGC TCATGCTCAT GCTCGGTCCG CTTGAAGAAT TGCTCCGCCT CAATGCGCCC
GAATGGTCGG AAGCGGAAAA AGCCAAAGTG GAAGTGACCC ACCGCAATGC GCTGCGTTTG
CTGAAACTCG TGAATACGCT CCTGGATTTC AGCAGAATGG AAGGCGGCCG CGGCCACGCA
CGGTTTGTGC GGACGGACCT GGCGGCTTAC ACCCAAAACC TGGCTTCCAA TTTCCGTTCG
GTGATCGAAA AGGCGGGTAT GCAGTTCGAG GTGAAGGTGG CCGGGGATGA ATGCGATGCG
TACGTAGACC GGCCGATGTG GGAGAAAGTG GTTTTCAATC TTTTGTCCAA TGCATTCAAA
TATACCCTGG AAGGCACGAT CACACTGGAA CTGAGCGCGG AGGAGAAGGC CGTACGGCTG
GCGGTAAGCG ATACGGGCGT GGGCATTCCC GCGCATGAGC TTCCGCATGT GTTCGAGCGT
TTTCACCGCG TGCAAAACTC GGCCGGGCGT ACCTACGAAG GCACCGGCAT AGGCTTGTCG
CTGATCCGGG AACTGGTGCA TTTGCACGGA GGCGACATTG GCGTGGAGAG CATGGAGGGC
AAAGGCAGTC GCTTCACAGT AACCGTGCCG CTTGGCAACA AGCACCTGGA CGCGTCGCAA
GTGTTCGAAA CAGACCCGGA AATGGCCGAG GCGATCTCCG ATTTTTATAT CAAAGAAGCT
GAAACGCTGC TGGCTGCGGG GCAATTTGCC GCCCGAAGCG ACAAGTCGTG CGACAATGGC
GGCAAAAATT GCGTCCTGAT TGCCGACGAC AATGCCGACA TGCGCCAGCA CATCCAGTCG
CTCTTGGGCA GCGAATACGA TACCTTAACC GCTTCCAATG GCGTGGAAGC CCTCGAAATC
ATCCGGCGGC ACCGGCCGGC GCTCGTGTTG AGCGATGTGA TGATGCCCGA AATGGACGGA
ATTGCATTGT TAAAGGCCGT GAAAAATGAT CCGGTGATCG CCCAAACGCC CATTATCCTG
ATCACCGCCC GGGCAGGAGA GGAGTCGAGG ATCGAGGGGA TCGAGATCGG TGCGGATGAT
TACATTGTAA AGCCGTTTTC GAGCAGGGAG CTCATCGTGC GGGCGCAGGC GCAAATGCGC
ATGTCGAGCG CGCGGAGCAA GATCGAAGCG AGCGAAAAGC AGTTCAGGAC GCTCACGGAA
ACATTACCCC AGCTGGTGTG GATGACCGAC GAAAAAGGCC ATGTGCTTTT CGCTTCGGGG
CGATGGATGG AATATTCGGG TGTGGCGCCG ACAGACGAGC ATTCCTGGCG GCAGATCGTC
CACCCGGACG ACCTTGAAGC CATTTCAGAA AGCTGGGCAT ACAGCCTGGC AACAGGCGCA
GGCTACAAGG CGGAAGTGCG CCTGCGAAGC AAAACCGGCG AATACCGCTG GCATTCCGGC
ATCGGAGAGC CCATTCGCGA CGAAATGGGC AGCATTATCA ACTGGATCGG CGCGTTTTCC
GATTCGCACG ACCAGCGCAT TTTCACGGAG GAACTCGAAC GAAAAGTGGA CCAGCGGACA
CAAGACCTGC TCCATGCCAA CAAAGAACTG GAATCGTTCA ACTACGTGGC CAGCCACGAC
CTTCAGGAGC CGCTGCGCAA GATCCAGACA TTCATTCACC TCATCGAACG CAACGATTTC
GATAGCGACC TTTCGAAGGG TTATTTCAAG AAAATTTACC TCGCATCGCA GCGTATGGGC
GAGCTGATCC AGTCGGTACT GTCGTACAGC CGTCTTTCCG AAAATGGCGA AAACTTGCAA
CTGGTGGATT TGAACAAGGT CATCGACGAC ATTCGCGTGG ATTTCGAGCT GGCGATCGAG
GAAAAGCAGG CGGCGGTGGT GTGCGAAAAC CTGCCCGTGC TCCGCGCCAA TGTGCTGCAA
ATGAACCAGC TGTTTTCCAA TCTTATCAGC AACTCGCTCA AATTCTCGAA CGGAAAGCCC
GAAATCCGGA TCACCGGCCG CCGCGAGGCC GGACGGGACA TCCCGCTTGC CGGTACCGGG
CCGCGCGAAG GCGACTATTA CCACATCACG ATCCGGGACA ACGGGATCGG CTTCGAGCCG
GAGTTTAGTG AGAAGATATT CGCGCTGTTT CAGCGGCTAC ACCGCAGGCA GGAATATGCC
GGAACGGGAA TCGGGCTGAG CATTGTCAAG AAAATCATTG AGCAGCACAA TGGCTACGTT
TCTGCCGAAT CACACCCAGG CGAAGGGGCT GTTTTTCACC TGTGGTTGCC CGCGTAA
 
Protein sequence
MTDPREQTAL EFLAGGGEMG RRIREFDWSA TELGSPGGWP QSLRTCIRIM LSSKQPIWIG 
WGPNLLKFYN DAYIDIVRGK HPHALGDPAS VVWKDIWKEI EPMLSRAMQR DEGTYVESRL
LIMVRSGFPE ETYYTFSYTP VLGDDGRPAG IICYNTADTE RILSERALKT MQQLDTLGER
KREGEVFAQV GRALSANVLD FPFAVLYKIS EDGERADLVA TSGVEGTDSR LDAQIRLSED
AGRYVHFARA VEDNKATEAL NRGQWEDLAR GGWDVAPKYV AYLPIQSASR KYPLALLAVG
LNPYRKLDEA YRNFLQQIAD RIALGLGNVM AYEEEQRRLR ALEELDKAKT LFFTNISHEF
RTPLMLMLGP LEELLRLNAP EWSEAEKAKV EVTHRNALRL LKLVNTLLDF SRMEGGRGHA
RFVRTDLAAY TQNLASNFRS VIEKAGMQFE VKVAGDECDA YVDRPMWEKV VFNLLSNAFK
YTLEGTITLE LSAEEKAVRL AVSDTGVGIP AHELPHVFER FHRVQNSAGR TYEGTGIGLS
LIRELVHLHG GDIGVESMEG KGSRFTVTVP LGNKHLDASQ VFETDPEMAE AISDFYIKEA
ETLLAAGQFA ARSDKSCDNG GKNCVLIADD NADMRQHIQS LLGSEYDTLT ASNGVEALEI
IRRHRPALVL SDVMMPEMDG IALLKAVKND PVIAQTPIIL ITARAGEESR IEGIEIGADD
YIVKPFSSRE LIVRAQAQMR MSSARSKIEA SEKQFRTLTE TLPQLVWMTD EKGHVLFASG
RWMEYSGVAP TDEHSWRQIV HPDDLEAISE SWAYSLATGA GYKAEVRLRS KTGEYRWHSG
IGEPIRDEMG SIINWIGAFS DSHDQRIFTE ELERKVDQRT QDLLHANKEL ESFNYVASHD
LQEPLRKIQT FIHLIERNDF DSDLSKGYFK KIYLASQRMG ELIQSVLSYS RLSENGENLQ
LVDLNKVIDD IRVDFELAIE EKQAAVVCEN LPVLRANVLQ MNQLFSNLIS NSLKFSNGKP
EIRITGRREA GRDIPLAGTG PREGDYYHIT IRDNGIGFEP EFSEKIFALF QRLHRRQEYA
GTGIGLSIVK KIIEQHNGYV SAESHPGEGA VFHLWLPA