| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1428 |
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| Symbol | |
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| ID | 8224999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1683738 |
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| End bp | 1686113 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644929287 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085839 |
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| Protein GI | 255035218 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000022223 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0329458 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATTA GTAAAATTCT GCATACAGGG CTCCTTTGTG CCTTATCGTT CGTCGCCTTT
GCCCAGCAGG CGGATGTTAC CCTCACAGGG CACGTCAGGT CGGAGGACGG CGAAACGCTC
CCCGGAGCCT CCGTGAGCCT GAAAGGCACT TCCAACGGAA CGTTTACCAA TGCGGACGGC
CAATACACCC TCGAACACGT CCGTCCCGGC TCTTATAAGT TGCTGGTTTC GTTTATGGGT
TACGAAACGC AAACCAAGGA CATTACGCTC AAAGCCGGCG AGCATTTCAA ATACAATCCC
AAACTGGTTT CTGAAACCCG CGAGCTGGAA TCGGTTTCGG TGATCGGGCG GACGGAGACG
AAGGAAATCA ACCGCCAGGC TTATAATGTA ACGGCGATCG ACGCCAAAAA GCTGCAAAAC
TCGACGCTCG ACCTTTCCCA TGCACTCGAC CGCGTGTCGG GGGTGCGTGT GCGGGAAAGC
GGCGGCGTGG GATCGAACAT GAACTTCTCG CTGAACGGCT TCACAGGCCG CCAGGTGAAA
TTCTTCCTGG ACGGCGTGCC GATGGATAAT TTCGGTTCGT CGTTTCAGCT CAATAACATT
CCCATCAACC TCGCCGAGCG CGTTGAAGTG TACAAGGGCG TGGTGCCGAT CTGGCTTGGC
TCCGATGCGC TGGGCGGTGC CGTGAATATC GTGACGAACA CGCGCCAGAA CAGTTACCTC
GATGCCTCTT ATTCGTACGG CTCGTTCAAC ACGCACCGCA CGACGATTAA TGCAGGTTTT
ACAGCAAAAA ACGGCTTTAC CGCCCAACTG AACGCATTTC AGAACTATTC GGACAATAAC
TACTGGATCA CCGTGGACGT GGCCGATGTG AACACCGGCG AGTATTTCCG CAACCAGCGC
CTGCGCCGTT TTCACGACAC CTACCACAAC GAAACGGTGA TCGCCAACGT GGGTGTGGTG
GGCAAGAAGT TCGCCGACCG GCTGCTGGTG GGTGTTACGC TGGGTAAGAA CAAGGCCGAG
ATCCAGACGG GAGCCCGGAT GGTGAGCGTG TTTGGGCAGT GGCATCGCAA GGGTAACATT
GTGATGCCGA GTTTGAAATA CTCCAAAAAA GATCTGTTTG TCAAAGGATT GAGCGTGAAT
GTATCAGCCA ATTACAACCT GGGGCAGGAG CAGAATGTGG ATACCGTTTA CCGCCGCTAC
AACTGGTTTC AGCAGTTTAA ACAATATGAA GGGAAAGGCA GCGAGCGCGA GCGGTCACTG
TACAAATTCC GGAACAACAA TGGCCTGGCT ACGGCCAATG TGACCTACCA GATCGATCCC
CGGCATTCGA TTACGATCAA CAATGTGCTC AATACATTTA ACCGCAAGGG TGAGGACGAG
CTTTTTCCCG AATCGGCGAG GTACGAGCAG CCGCGCGTCA ACCGTAAGAA TGTACTCGGC
GTGGGCTATA AGTTTGATTA TTCCGAACGC TGGAACACGT CTTTGTTCGT CAAGCATTTC
TCCCAAAACA ACAAGTTCTC CGTTTCTTAC AACCCGACCG GAAACTGGGG CGACGAGGCA
TTCATGGTTC AGAAAAACAG TTTCGAAAAG CTGGGCTACG GCGTCGCATC CACCTATTTT
CTTTTCAAAA ATTTCCAGTT AAAAGGCTCA TTTGAAAAAA GTTACCGCCT GCCCGAAACC
GACGAGCTCT TCGGCGATCT GCTCAACCTC GAAGGCAATA TCGAACTCGA TCCTGAAACA
AGCTATAATT ACAACCTGGG TTTCAGCTAC AATGGCGCCA TTAACCGCGC GCACCGGTTC
AGCGTGGATG CGAATGTGCT CTACCGCGAC GCCCAGGGCT TCATCCGCCC GCGCCTGAAT
GCCAACCAAA CCAAGCAGGT AATGGACAAC CTGGCCGACG TGACCAACTT CGGCATCGAT
GGAGAAGTGC GCTACTCGTT CCGCCAGCTG CTCACCGCCG GCGTGAACCT TACTTACCAG
AACCTGCGCA ACAACACTCG TTTCGAGGAA GGCTACACGA CCGAAAGCCC GCTCTACCGC
GACCGTATCC CCAACATGCC GTTCCTCTTC GGCAATGCGG ATGCAGCGGT TTTCTTCAAG
GATTTGGGTA AAAAAGGGAA CACGCTCACG CTCGGTTACA ACCTGCTTTA CGTGCACGCT
TATTACCTCT ACTGGCCAAG CCTCGGCAGC GACAAGCTCG ATATTCCCGA GCAGCTCAGC
CACGATGTGA ATGTGGTGTA CGCCATGGCC GATGGTAAAT ACAATGTCTC GCTGGAATGC
AAAAACCTCC TCGACGCGAA GCTATTTGAC AATTTCAGTT TGCAGAAGCC TAGTCGCGGT
TTCTACGTCA AATTACGCTA TTTTATCAGT AAATAA
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| Protein sequence | MQISKILHTG LLCALSFVAF AQQADVTLTG HVRSEDGETL PGASVSLKGT SNGTFTNADG
QYTLEHVRPG SYKLLVSFMG YETQTKDITL KAGEHFKYNP KLVSETRELE SVSVIGRTET
KEINRQAYNV TAIDAKKLQN STLDLSHALD RVSGVRVRES GGVGSNMNFS LNGFTGRQVK
FFLDGVPMDN FGSSFQLNNI PINLAERVEV YKGVVPIWLG SDALGGAVNI VTNTRQNSYL
DASYSYGSFN THRTTINAGF TAKNGFTAQL NAFQNYSDNN YWITVDVADV NTGEYFRNQR
LRRFHDTYHN ETVIANVGVV GKKFADRLLV GVTLGKNKAE IQTGARMVSV FGQWHRKGNI
VMPSLKYSKK DLFVKGLSVN VSANYNLGQE QNVDTVYRRY NWFQQFKQYE GKGSERERSL
YKFRNNNGLA TANVTYQIDP RHSITINNVL NTFNRKGEDE LFPESARYEQ PRVNRKNVLG
VGYKFDYSER WNTSLFVKHF SQNNKFSVSY NPTGNWGDEA FMVQKNSFEK LGYGVASTYF
LFKNFQLKGS FEKSYRLPET DELFGDLLNL EGNIELDPET SYNYNLGFSY NGAINRAHRF
SVDANVLYRD AQGFIRPRLN ANQTKQVMDN LADVTNFGID GEVRYSFRQL LTAGVNLTYQ
NLRNNTRFEE GYTTESPLYR DRIPNMPFLF GNADAAVFFK DLGKKGNTLT LGYNLLYVHA
YYLYWPSLGS DKLDIPEQLS HDVNVVYAMA DGKYNVSLEC KNLLDAKLFD NFSLQKPSRG
FYVKLRYFIS K
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