Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1235 |
Symbol | |
ID | 8224806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1467137 |
End bp | 1467883 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644929097 |
Product | pseudouridine synthase |
Protein accession | YP_003085649 |
Protein GI | 255035028 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.176862 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0316242 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGAGCCAG TCAGGATCAA CAAGTTTATC AGTGAAACCG GTTTCTGTTC AAGAAGGGAA GCCGACAAGC TCGTGGAGCA GGGGAGGGTT ATGTTGAACG GCCGGAAAGC AGTTTTGGGT GATAAGGCAA CGACTTCGGA CGATGTGCGC GTGGATGGTA AGCCGCTCAA AGCCAAAAAG GCGGGCGTCT ACATTGCATT CAACAAACCC GTGGGCATTA CCTGTACCAC CGAGCGGCAT ATCAAAGGCA ACATCATCGA CTACATCCGG CACAAGGAGC GCATCTTTCC CATTGGCCGG CTCGACAAGC CGTCGGAAGG ACTGATATTC CTCACCAGCG ACGGTGACAT TGTAAACAAG ATCCTCCGGG CGGGGAACAA CCACGAGAAA GAGTACGTGG TGACGGTCAA CAAGCCGATC ACACCCGAAT TCATACAAAA AATGTCGTCC GGCGTCCCCA TTTTAGGGGT TGTAACTAAG AAATGCTTTG TCCGGAAAGA CAGCAGCTAC GTTTTTACCA TCATTCTCAC GCAGGGCCTC AACCGCCAGA TCCGCCGGAT GTGCGAGTTC CTTGGCTACA ATGTGACGAA GCTGAAACGC GTCCGGATCA TGAACGTTAC GCTCAAAGAC CTTCCCGTGG GCAAGTGGCG CGACCTGACA GCCGCGGAAA TGCAGGAGAT CAATGCGGCG ATAGCCGGTT CGACGAAAAC GGAAGAAGGG TCGTACCTGG ACGACTGGGA CGAATAG
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Protein sequence | MEPVRINKFI SETGFCSRRE ADKLVEQGRV MLNGRKAVLG DKATTSDDVR VDGKPLKAKK AGVYIAFNKP VGITCTTERH IKGNIIDYIR HKERIFPIGR LDKPSEGLIF LTSDGDIVNK ILRAGNNHEK EYVVTVNKPI TPEFIQKMSS GVPILGVVTK KCFVRKDSSY VFTIILTQGL NRQIRRMCEF LGYNVTKLKR VRIMNVTLKD LPVGKWRDLT AAEMQEINAA IAGSTKTEEG SYLDDWDE
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