Gene Dfer_1213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1213 
Symbol 
ID8224784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1440531 
End bp1441715 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content55% 
IMG OID644929075 
Producttranscriptional regulator, XRE family 
Protein accessionYP_003085627 
Protein GI255035006 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00829806 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000499416 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCATCG TCAGCAATAA CATCAAGTAT CTCAGAAGGC TCAACGGCCT GACGCAGGAA 
CAGTTTGCCC GTAAGATCGC GATCAAGAGA TCGTTACTGG GCGCTTACGA AGAGGCGCGG
GCCAACCCCA ACCTTACTAA TCTCAAAAAC ATGGCCGCCG CTTTCGGGGT TAGCGTTGAT
AATTTGCTAA AAAACGACCT CCGAAAACTA AGGGAAACGC CGGAAATGTC GCTCCCGCTT
ACTACCTCGC GGCAAATGAC GGTTTCCCAC TCGGGCCTGC CCCAGTCTAC CCCTACACGC
ACGCCTGGGT ACACGGAGCC GCAGCCATTG TCTAAGATCA TCGAAACATA CCAGCAGCCC
GAGCAGCCGC TCAGGCAGGT TTCCAGGCAG ATTAACCTGA AACCGGTCGG CGGTGAAATG
CAGCAGCCCG TGCAGCATTT CAATGCAGCC AGTCCGCAGG CGCTGCCGTT TAACCAGCCG
GGTGCAGCCC AGCAGGGTGC GGCCCAGCCG AATGCGGCCC AGCCGGGTGC GGCCCAACAG
GAAGTTTTTC AGCAACCGAA CTTTCAGCAG CCAGCTCCCA GCAGGACGGC AGCGACATAC
CAGCAGCCGG CAGCGGTTCC GGCAGCGGCG CAGCCGGCCG GGTTTCCGAC ATTTAATAAT
CAATATCAAA GTCCACAATT CAATGCGGCG GTGGAACAGC CTGCGCAACA CTTCCCTACC
ATTCAATGGG TGGCGCGTAA TCAGCAGGCC GATTACATTG CCAATTTTCA GAATCCGCAT
TATTTGAATG CATTGCCGCT TTTCCAGCTG CCTAACCTGC CGACGGGCTA TTATCGTGCA
TTCGAAAGCG GCGAGGACTT CACCTACCCC GGCTCGATTC TCGTGGGCAC ATTCATTCGC
AACTGGTACG ATATCAAGGA CGGCATGCAG TATGTTTTCC TGCTCCGAAG CCACGGACTG
ATTTACAGAA ATGTATTCAA TCAGGTGAAA ACGGCCGGCA CTTTGCTGCT TACCTCCGAT
AATGCGTCTA TTGCGGACCT GGAAATTCCA TTGCAGGATG TGCTGGAAGT GTGGGAAGTG
AAGGCTTTTG TAAGCGTGCA AATGCCTGTG CCTCAACCTT CACTCGAAAG GGTGGCTCAG
CTCGTGGATG AATTGCAAAT GGAGCTGAGC CAGTACCGTC AGTAA
 
Protein sequence
MSIVSNNIKY LRRLNGLTQE QFARKIAIKR SLLGAYEEAR ANPNLTNLKN MAAAFGVSVD 
NLLKNDLRKL RETPEMSLPL TTSRQMTVSH SGLPQSTPTR TPGYTEPQPL SKIIETYQQP
EQPLRQVSRQ INLKPVGGEM QQPVQHFNAA SPQALPFNQP GAAQQGAAQP NAAQPGAAQQ
EVFQQPNFQQ PAPSRTAATY QQPAAVPAAA QPAGFPTFNN QYQSPQFNAA VEQPAQHFPT
IQWVARNQQA DYIANFQNPH YLNALPLFQL PNLPTGYYRA FESGEDFTYP GSILVGTFIR
NWYDIKDGMQ YVFLLRSHGL IYRNVFNQVK TAGTLLLTSD NASIADLEIP LQDVLEVWEV
KAFVSVQMPV PQPSLERVAQ LVDELQMELS QYRQ