Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1213 |
Symbol | |
ID | 8224784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 1440531 |
End bp | 1441715 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644929075 |
Product | transcriptional regulator, XRE family |
Protein accession | YP_003085627 |
Protein GI | 255035006 |
COG category | [K] Transcription |
COG ID | [COG1396] Predicted transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00829806 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000499416 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCATCG TCAGCAATAA CATCAAGTAT CTCAGAAGGC TCAACGGCCT GACGCAGGAA CAGTTTGCCC GTAAGATCGC GATCAAGAGA TCGTTACTGG GCGCTTACGA AGAGGCGCGG GCCAACCCCA ACCTTACTAA TCTCAAAAAC ATGGCCGCCG CTTTCGGGGT TAGCGTTGAT AATTTGCTAA AAAACGACCT CCGAAAACTA AGGGAAACGC CGGAAATGTC GCTCCCGCTT ACTACCTCGC GGCAAATGAC GGTTTCCCAC TCGGGCCTGC CCCAGTCTAC CCCTACACGC ACGCCTGGGT ACACGGAGCC GCAGCCATTG TCTAAGATCA TCGAAACATA CCAGCAGCCC GAGCAGCCGC TCAGGCAGGT TTCCAGGCAG ATTAACCTGA AACCGGTCGG CGGTGAAATG CAGCAGCCCG TGCAGCATTT CAATGCAGCC AGTCCGCAGG CGCTGCCGTT TAACCAGCCG GGTGCAGCCC AGCAGGGTGC GGCCCAGCCG AATGCGGCCC AGCCGGGTGC GGCCCAACAG GAAGTTTTTC AGCAACCGAA CTTTCAGCAG CCAGCTCCCA GCAGGACGGC AGCGACATAC CAGCAGCCGG CAGCGGTTCC GGCAGCGGCG CAGCCGGCCG GGTTTCCGAC ATTTAATAAT CAATATCAAA GTCCACAATT CAATGCGGCG GTGGAACAGC CTGCGCAACA CTTCCCTACC ATTCAATGGG TGGCGCGTAA TCAGCAGGCC GATTACATTG CCAATTTTCA GAATCCGCAT TATTTGAATG CATTGCCGCT TTTCCAGCTG CCTAACCTGC CGACGGGCTA TTATCGTGCA TTCGAAAGCG GCGAGGACTT CACCTACCCC GGCTCGATTC TCGTGGGCAC ATTCATTCGC AACTGGTACG ATATCAAGGA CGGCATGCAG TATGTTTTCC TGCTCCGAAG CCACGGACTG ATTTACAGAA ATGTATTCAA TCAGGTGAAA ACGGCCGGCA CTTTGCTGCT TACCTCCGAT AATGCGTCTA TTGCGGACCT GGAAATTCCA TTGCAGGATG TGCTGGAAGT GTGGGAAGTG AAGGCTTTTG TAAGCGTGCA AATGCCTGTG CCTCAACCTT CACTCGAAAG GGTGGCTCAG CTCGTGGATG AATTGCAAAT GGAGCTGAGC CAGTACCGTC AGTAA
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Protein sequence | MSIVSNNIKY LRRLNGLTQE QFARKIAIKR SLLGAYEEAR ANPNLTNLKN MAAAFGVSVD NLLKNDLRKL RETPEMSLPL TTSRQMTVSH SGLPQSTPTR TPGYTEPQPL SKIIETYQQP EQPLRQVSRQ INLKPVGGEM QQPVQHFNAA SPQALPFNQP GAAQQGAAQP NAAQPGAAQQ EVFQQPNFQQ PAPSRTAATY QQPAAVPAAA QPAGFPTFNN QYQSPQFNAA VEQPAQHFPT IQWVARNQQA DYIANFQNPH YLNALPLFQL PNLPTGYYRA FESGEDFTYP GSILVGTFIR NWYDIKDGMQ YVFLLRSHGL IYRNVFNQVK TAGTLLLTSD NASIADLEIP LQDVLEVWEV KAFVSVQMPV PQPSLERVAQ LVDELQMELS QYRQ
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