| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1064 |
|---|
| Symbol | |
|---|
| ID | 8224635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1261003 |
|---|
| End bp | 1261905 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644928926 |
|---|
| Product | HhH-GPD family protein |
|---|
| Protein accession | YP_003085478 |
|---|
| Protein GI | 255034857 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.510793 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAAC AAACTATTCT TATCCCGAAT CCGCCGCTGT TCAGTTTCCG CGAATGCCAC
TGGTTTCTCG ACCGCGATTT TGACGATTGC ATGCACACCA TTCGCGGCAA TGCGGTTCTG
AAAGCAATCC GGACGTCGTT TGGCGATATC CTGTTTCGGG TGAGTGAAGA AGCTAATTTC
CTGAAAACCG AGATTTTGTA CGGAGCCGCA GCCCCCGAAG CGCGTGACCT CGTTGTCGGT
TACGTGGCCA ACTGGTTCGA CCTGAACCGT GATATCGAGC CGTTTTACGA CCTTTTGGCA
GCCGATTCCC GCCTCGCTTA CATGACCGAC GCCTTCCGGG GTTTACGATT GGTCGGCATT
TCGGACATGT TCGAAGCGAT TTGCTGGTCC ATTATCGGTC AGCAAATCAA CCTCACATTC
GCGTACAAGC TGAAACGGCG GATGGTGGAA CGCTACGGCA CGCACGTGGA GTGGAACGGC
GAGGTCTTCC CGGTTTTTCC AACCCCCGAG GCGCTGGCCA ATGCCGGCAT CGACGAGCTG
CGTGCCATGC AATTTTCTCA AAAAAAGGCG GAATACGTGG TAGGCATTGC ACAAGCATTC
GCCGATGGAA AACTGAATGC GGAAGTGATC AGCGCATTAC CCGATTTCGC GTCGCGGCAA
AAAGTGCTGG TTGCGTACAA GGGTGTGGGT ATCTGGACGG CCAATTATGT GCTCATGAAA
ACGTTCCGCA TGCCCGAAGG CATTCCGCAC GGCGATGTAG GCCTGCTAAA TGCGCTCGCT
GGGCATGGTA TCATTGGGGA TCGGAGTGAG AAGGAAAAAA TTGAGGCGCT CTTCCATGCA
TTTCCCGGCT GGGAAACTTA CCTGACATTC TATTTATGGC GCAGCCTCGC TATGAAACGT
TAG
|
|---|
| Protein sequence | MDQQTILIPN PPLFSFRECH WFLDRDFDDC MHTIRGNAVL KAIRTSFGDI LFRVSEEANF
LKTEILYGAA APEARDLVVG YVANWFDLNR DIEPFYDLLA ADSRLAYMTD AFRGLRLVGI
SDMFEAICWS IIGQQINLTF AYKLKRRMVE RYGTHVEWNG EVFPVFPTPE ALANAGIDEL
RAMQFSQKKA EYVVGIAQAF ADGKLNAEVI SALPDFASRQ KVLVAYKGVG IWTANYVLMK
TFRMPEGIPH GDVGLLNALA GHGIIGDRSE KEKIEALFHA FPGWETYLTF YLWRSLAMKR
|
|---|
| |