Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1045 |
Symbol | dapD |
ID | 8224615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1237827 |
End bp | 1238642 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644928906 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_003085459 |
Protein GI | 255034838 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.485507 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.309423 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTCA CTGCACAAAT TGAAAATTAC TGGGCTAACC GGGAATTACT GAAAGATGAA TCGGCAAAGA ATTTTATCCG GGATATCATT GAGGAAGTCG ATAAGGGAAG GCTTCGTGTG GCCGAGCCGG ATGCTAATGG CGGATGGATC GTTAACGAAG CGCTAAAAAA AGCGATCATC CTTTACTTCC CCATCCAGCA AATGCATGTT AGCGAAGTTG GCATTTTTGA GTACCATGAT AAAATGAAAC TAAAATCAGG CTACGAGCAA CTAGGCGTAC GCGTGGTGCC GCCGGCCGTT GCGCGATATG GTGCTTACAT TTCCAAGGGG GTTGTGCTAA TGCCGTCCTA TGTGAACATT GGTGCCTATA TCGACGAAGG AACAATGGTC GATACCTGGG CGACTGTCGG TAGCTGTGCT CAGATCGGCA AGAACGTTCA CCTGAGCGGA GGCGTAGGAA TAGGAGGGGT GCTCGAACCC GTCCAGGCAG CTCCCGTTAT TATAGAAGAT GGCGCGTTCA TTGGTTCGCG CTGTATCGTT GTCGAAGGTG CGCGCGTTGG TAAAAGAGCG GTTCTCGGTG CCGGTGTTAC GATTACAGGC AGCTCAAAAA TCATCGATGT AACAGGCAGC GAACCAGTAG AGTACAAAGG TTACGTGCCG GAAGACTCCG TAGTTATCCC CGGAACGCTA CCCAAAGAAT TTGCGGCGGG AACCTATCAT GTCCCTTGCG CCCTGATCAT CGGCAAGCGC AAACCAAGCA CGGATCTCAA AACTTCCCTG AATGACGCAC TACGCGACAA TAGCGTAGCC GTGTAG
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Protein sequence | MDFTAQIENY WANRELLKDE SAKNFIRDII EEVDKGRLRV AEPDANGGWI VNEALKKAII LYFPIQQMHV SEVGIFEYHD KMKLKSGYEQ LGVRVVPPAV ARYGAYISKG VVLMPSYVNI GAYIDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP VQAAPVIIED GAFIGSRCIV VEGARVGKRA VLGAGVTITG SSKIIDVTGS EPVEYKGYVP EDSVVIPGTL PKEFAAGTYH VPCALIIGKR KPSTDLKTSL NDALRDNSVA V
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