Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0811 |
Symbol | |
ID | 8224380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 961327 |
End bp | 964377 |
Gene Length | 3051 bp |
Protein Length | 1016 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644928682 |
Product | TonB-dependent receptor |
Protein accession | YP_003085236 |
Protein GI | 255034615 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000353149 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTTCCT GCTCCCTGCT CATGGCGCAG CAGGTGATTG TGAAGGGAAA AGTGACAGAC AACTCCGGCG TCGGGCTCCC CGGTGTGAAC GTGGTTTTGA AGGGCAATAC GAGCGGGACT TCCACGGACC AGAATGGCGA TTACAACCTC GCGCTTCCTG GCGGTGCCGG CGAAAACCAG GTACTTGTAT ATTCTTTTAT AGGTTACGTG CGGCAGGAAA TTGCCGTAGC AAACCGGACG AGCATTGATG TAACCCTGGC TGTGGATTCT CAAAATCTGG ACGAGGTGGT CGTGGTCGGT TACGGAACCA CAGCCAAGAA AAACCTGACG ACGGCGATCG CCAAAGTGGA CCCTACGAAA ATTCCTACTT CGGCCAATAA CAACGTTTCC GAACTGCTCT TCGGCCGTGC GGCCGGCTTG CAGGTAACAC AGCAAAGCTC GCAGCCGGGC GGTAACATTT CCGTTTCGAT CCGCGGGAAA GGCAATCCAT TGCTGGTAAT CGACGGCGTG GTAATCCCGG GCGACGCAAT GGAGCCGGGC AATGGTTCGG TGGAAATACA GGGCGTCAAC CGCGGTGGGC TCGGCGGACT GAACCCGAAT GATATCGAAT CGATCGAATT CCTGAAAGAT GCAAGCGCGG CGATTTACGG TGTATCGGCA GCCAACGGGG TAATGATCAT TACGACCAAA AAAGGAAAAG CCGGGCGGAT GAATGTGAGC TACGACGGGA GCCATTCGTT CACGAGAAAT ATGCCCTACC TGAAACCGCT CAATGCGACG GACTATATGC GGTACTACAA TGAACTGAGC AGGGACAAAT ACCAGTCCGA CCGCAATATG GGGCCATTTG GGAATGTGCC GGTAGACCTG AGCGGCTACA CCCAGCGCTA TTCGGAGCAG GACATTCAGA ATGCCGGGGA AGGCACCGAC TGGCTGGGCC AGGTGCTGCG GCCGGGCAGC ATCGATAACC ATAATATCAG CGTCAACGGA GGAACGGAAA AAGCAACATA CTTTTTCTCC GGCAACTATT TCAACCAGGT GGGATCGATG AAAAACTCGG ACCTGAGACG GTTTTCGGGC AGGTTGAATG TGAGTTTTGT TTTGAGCAAA ATTTTCAGGC TGAATGTAAA TGTGAATGCC AACCGCAATG CTTATGCCAA TCCGCAGGCC GGGTGGCAAA CGGGCGGCTC GGGCACGCAG GGTTTCAATG CTTTGCAGGC GGCGCTGGCC TATCCTTCTT CGGTGCCGGT GTACAATGCC GACGGCAGTT ACAGTCAGTT CGCCGTTACG GGCAACCCTG TTTCGTTGCT GGATATCAAG GACAAGACAA AGGCTCAGGG CCTGCTGGCA AACACTTCGC TGGATATTGA CATTATCCCT AACACATTGA CGGCCAAATT GCTATACGGA AATAACACTG AGAATTCGAC CCGTGATTTC TACATTCCCA GCGACGTTTT CTGGGGACAA TTATACAGAT CGCGTGCTTC CCTGGCTGAA ACGCGCCGGC AAAACCAGAC GATGGAAGCG ACCATGTCGT ACAAAAAATC ATTCGGCGAT TGGCTGAACC TGGACGTGGT AACCGGCGTA GGCCAATACC TGGAAGACTT CTCAGGTTTC AGTGTCGAAA CGTCGATGAC ACAAGATGCG ATCAATACGG ATAACCTGGG CGCGGCAACC GGCCCCAAAA TCATCGGTTC CTACCGCGGC GTCAACAAGC TCCGTTCCTT CTTTATTCGC AGCAATTTCG ACATCCTCGA TCGTTTCCTG CTCTCGCTTA CAGTCCGCCG GGACGGTGCC GACAAGTTTT TCCCTAACAA CAAATACCAG TATTTCCCAT CGGTGTCAGC GGGATGGAAG ATCAATAACG AGGCATTTAT GCAGGATATC AAGGTAATCA GCACATTGAA GCTCCGTGCC AGCTATGGTA CTACCGGCGA ACGCCCGGGA AGTGTGGCTT ATGGTGCTTT TGCTGCTGAT CCCAATGCAG TTACCTTCAA CAATGGCTCA GTGGTGTATT TCCCTTACCG GCTTACTGCA TTTGACAACC CCAACCTGCG CTGGCCCATT ACGAAGACAT TCAATGCCGG TCTGGACTTT GGGTTATTTA AAGAGCGGAT CACCGGTTCG GTGGATGTTT TTACAGAAAA CAGGACCCGC CTGCTCAGCA GCGCTACCAC GCAGCAATTG TCGATCATCT CCACGTCGCC TATCAACGGC GGCCACCAGC GTCGCAAGGG TTTCGAGGTA AGTGTGAATA CTGAAAATAT CAAAACCAAC GATTTCAGCT GGAATTCCAC GATTAATGTG ACGCACTTCA AAAACCGCTG GGTGAAGCGC TTTCCCAATG ATCCGCCTGC ACAATACGGC CGGGTAAATG ATCCGGTGGG CAACGATATT ATTTATGTGT ACCAAACCAA TGGTATCCTG CAAGCCGGAC AGGAAGTGCC TGCCTGGCAG CCAGCCTCGG CCTCCAAGCC CGGGAACCCG GTTTTTGTCG ACAACAATGG GGACGGAAAA CTGGATTTCA ACGATGTGAA AAGCTTCTCC GGCATTCCGA AGGCGATCAT CGGTTTTGGA AACAATTTCA CTTATGGAAA ATTTGACCTG AGCGTGTTTA TGTACGGTCA GTATGGCGCG TGGGGCAACG ATTTTACCAC TTTATGGGGC GATCCTGTCG GGTTATTGTC TAACAACCAA AGCGGTACGG AGCGGATCAA GGACGCTTGG AGTACTTCCA ACCCGACCGG TACCCTGCCC GGCGCCGCTT ACAACGAAGC CGCGATCGCG CTAGATGCCG GCCTGGATAC GCGATTGGTA AAACGCGATT TCCTGCGCTG CCGCAATATT ACATTGGGCT ATACGATCAA CTCGGGCGGA CTGAGCAAGT ACGTGAGAAG TATCCGCGTT TTCGCCGATT TGCAAAACGC GTTCATCCTG ACGGGTTTCA AAGGCGTGGA TCCTGAAATT CAGGCCAATT CCATCAAAGG CGGACCAGCG CCCTACCCGA TGGTGAGAAC ATTATCGCTG GGTTTGCGGG CTAATTTTTA A
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Protein sequence | MLSCSLLMAQ QVIVKGKVTD NSGVGLPGVN VVLKGNTSGT STDQNGDYNL ALPGGAGENQ VLVYSFIGYV RQEIAVANRT SIDVTLAVDS QNLDEVVVVG YGTTAKKNLT TAIAKVDPTK IPTSANNNVS ELLFGRAAGL QVTQQSSQPG GNISVSIRGK GNPLLVIDGV VIPGDAMEPG NGSVEIQGVN RGGLGGLNPN DIESIEFLKD ASAAIYGVSA ANGVMIITTK KGKAGRMNVS YDGSHSFTRN MPYLKPLNAT DYMRYYNELS RDKYQSDRNM GPFGNVPVDL SGYTQRYSEQ DIQNAGEGTD WLGQVLRPGS IDNHNISVNG GTEKATYFFS GNYFNQVGSM KNSDLRRFSG RLNVSFVLSK IFRLNVNVNA NRNAYANPQA GWQTGGSGTQ GFNALQAALA YPSSVPVYNA DGSYSQFAVT GNPVSLLDIK DKTKAQGLLA NTSLDIDIIP NTLTAKLLYG NNTENSTRDF YIPSDVFWGQ LYRSRASLAE TRRQNQTMEA TMSYKKSFGD WLNLDVVTGV GQYLEDFSGF SVETSMTQDA INTDNLGAAT GPKIIGSYRG VNKLRSFFIR SNFDILDRFL LSLTVRRDGA DKFFPNNKYQ YFPSVSAGWK INNEAFMQDI KVISTLKLRA SYGTTGERPG SVAYGAFAAD PNAVTFNNGS VVYFPYRLTA FDNPNLRWPI TKTFNAGLDF GLFKERITGS VDVFTENRTR LLSSATTQQL SIISTSPING GHQRRKGFEV SVNTENIKTN DFSWNSTINV THFKNRWVKR FPNDPPAQYG RVNDPVGNDI IYVYQTNGIL QAGQEVPAWQ PASASKPGNP VFVDNNGDGK LDFNDVKSFS GIPKAIIGFG NNFTYGKFDL SVFMYGQYGA WGNDFTTLWG DPVGLLSNNQ SGTERIKDAW STSNPTGTLP GAAYNEAAIA LDAGLDTRLV KRDFLRCRNI TLGYTINSGG LSKYVRSIRV FADLQNAFIL TGFKGVDPEI QANSIKGGPA PYPMVRTLSL GLRANF
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