Gene Dfer_0662 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0662 
Symbol 
ID8224231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp771882 
End bp772874 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content47% 
IMG OID644928535 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_003085089 
Protein GI255034468 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0114263 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATC ACGAAATTGA TTTAAGCCAA AGCCTGAACA ATGAAGGCGT TATCCTTTTT 
TTAAACGGGC AAATAGAAGA AGCAATTGCC AAATATCGGC AGGCCATTGC CGCGGAGCCC
GACAATGCGT CTGCCCACAA TAACCTGGGT TTTGCATTGG CGCAACAAGG CGATTTCGAA
CAGGCTTCGG AACACTATCG CTTATCGCTC GAACTCGACC CGGAAAATGA TAATACATGG
CTTAATCTGG GAAATTTAAA AATGATGTCC GGCGATTATT CCGGGGCCAG GGATTTATTT
GAAAATGCAT TAAATATCAC CCGTGACATT GCAAATGTTT GGGAAAGTTA TGCCAAACTG
ATGACAATTT CCGACGACCC TTCTGCGGCT GTAAATGCCT GGCAGCAAGC GTTGCGCATT
CATCCGCACT CCCCGGATTA CCATCTCGAA TTGGGAATTG CACTCATCGC CGATGGCAAA
CATTCGCAGG CGATTTATCA TTTGCAGGAA GTTTTGTATC AGGATCAGGA AAATATACGG
GCTAACCTGA GCCTCGGTAT CGTCCATCTA ATTCAGCAGA ATTATGGTTT GTCGCAGCAA
TTTCTCAAAA AGGTTTTAGG AATTGAGCCG GAAAACTCAT CGGCGCGGTA CCATTTGGCC
ATGAACTATT TATCGACCCA TAACGAACCG CTGGCGATCC AGGAATTGGA AAGGATTCTG
ATCATGTATC CCAATGACCT CACCACGATG TCGGACCTCG CGGTGGTTTA CCTCGCCACC
GACCAGGCCG GGCGGGCCAG GGCGCTCATT GACAAATGCC TCAAATTAAA CCCCGAACAC
CCCAAAGCCG CCTATTACAA CGCATTGATC GATCATATCG AAAAGCGCTT TCAGGAATCG
CACCGGAAGC TGAGCAACCT GGTTACGCAA AACCCGCCGG TTTACGGAGC AAAAGCAAAG
CAATACCTGG ATACGTATTT TTCAACTTTT TAA
 
Protein sequence
MENHEIDLSQ SLNNEGVILF LNGQIEEAIA KYRQAIAAEP DNASAHNNLG FALAQQGDFE 
QASEHYRLSL ELDPENDNTW LNLGNLKMMS GDYSGARDLF ENALNITRDI ANVWESYAKL
MTISDDPSAA VNAWQQALRI HPHSPDYHLE LGIALIADGK HSQAIYHLQE VLYQDQENIR
ANLSLGIVHL IQQNYGLSQQ FLKKVLGIEP ENSSARYHLA MNYLSTHNEP LAIQELERIL
IMYPNDLTTM SDLAVVYLAT DQAGRARALI DKCLKLNPEH PKAAYYNALI DHIEKRFQES
HRKLSNLVTQ NPPVYGAKAK QYLDTYFSTF