| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0286 |
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| Symbol | |
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| ID | 8223852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 323692 |
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| End bp | 324699 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644928164 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003084721 |
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| Protein GI | 255034100 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.433655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAACC AAGACCTTTC AAGACGCCGT TTTCTGGGCA CGTCGGCCCT GGCGGCGGCG
GGTTTCGTGA TGGCGCGCAC CCCGATTTTC GGCGCACCGG CTTACATTAA GAAATTCGGC
AAGCCCAATT CGCTGTTCAA CGGCGTGCAG GTGGGGGCCA TTACCTACTC GTGGAGGAGC
CTGCCCGGCG GCGCGGAGGA CATTTTGAAA TACTGTATCG AAACGAATAT CAGCGCCATC
GAGCTCATGG GCCCGACGGC AGAATTGTTC GCAGGAGCGC CCGAAGCCCC ACCGCGCCCC
AGCATGACAC CCGGCCCCGA CGGCAAACGC CCCGAACCGA CCGAAGAACA AAAGGCGGCC
CAAAAAGAGT ATGGCAAGAA AATGGCCGAA TGGCGCGCCA AAGTGTCGAT GGACAAGTTT
GTGCAGCTGC GTAAGATGTA TAACGATGCC GGTGTGAGCA TTTACGGTTT CAAACCCAAT
GCGCTGGGCA CGAACAATAC CGATGCCGAA GTGGACTACG CATTCCGCGC CGCCAAGGCC
CTGGGCGCCA ACCAGGCCAA CGTGGAGCTG CCAAACGACC CGGCACAAAC CAAACGTCTG
GGCGACATCG CGGCCAAAAA CAAGGTATAT TGCGGCTATC ACGGCCACAC GCAGCAAACC
CCGACATGGT GGGACACCGC GCTCGGTCAG TCGAAATACA ATGCGATGAA CTTTGATATG
GGTCATTATG TAGCCGCCGG TTTCGATCCG TTCCCATTAC TGGAAGCGAA GCACGACCAC
ATCGTAAGCA TGCACGTGAA AGACCGCAAA AACAAGCAGA ACGGCGGCGC CAACCTGCCG
TGGGGCCAGG GCGATACCCC CATCGTAGCC GTGCTGGAAA CGATGCGCGC CAAAAAATAC
AAGTTCCCGG CTACCATCGA ACTGGAATAT GAAATCCCGG CCGGCTCGGA TGCGTTGAAA
GAAACCGCTA AATGCGTCGA ATTCGCGCGG AAGGCACTGG GAGCGTAA
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| Protein sequence | MENQDLSRRR FLGTSALAAA GFVMARTPIF GAPAYIKKFG KPNSLFNGVQ VGAITYSWRS
LPGGAEDILK YCIETNISAI ELMGPTAELF AGAPEAPPRP SMTPGPDGKR PEPTEEQKAA
QKEYGKKMAE WRAKVSMDKF VQLRKMYNDA GVSIYGFKPN ALGTNNTDAE VDYAFRAAKA
LGANQANVEL PNDPAQTKRL GDIAAKNKVY CGYHGHTQQT PTWWDTALGQ SKYNAMNFDM
GHYVAAGFDP FPLLEAKHDH IVSMHVKDRK NKQNGGANLP WGQGDTPIVA VLETMRAKKY
KFPATIELEY EIPAGSDALK ETAKCVEFAR KALGA
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