Gene Dfer_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0076 
Symbol 
ID8223642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp93139 
End bp93825 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content57% 
IMG OID644927955 
Productpseudouridine synthase 
Protein accessionYP_003084512 
Protein GI255033891 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.694832 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.499098 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCCC TGGAAATCCT GTACCGGAGC GACGACCTTG TCGCCATTAA CAAACCCAAT 
GGCCTGCTCG TACACCGTTC GCCCATTGCC AGCGATGCGG ACGTCTTCGC GGTGCAGCTC
CTGCGCGATC AGCTGAGCCA GAAGGTATAC CCGGCCCACC GCCTCGACCG GAAAACTTCC
GGCGTACTGC TCTTCGCCCT CAACGAAAAC GTGAACAGCG AAATGCAGGG GAAATTCATG
GAAGGCGAAA TCACCAAAAC CTACCACGCG ATCGTCCGCG GGCACACAGC CGACCGCGGC
GAGATCGATT ATCCATTAAA ACGCGACGAC GGCGTAACGC AGGATGCCGT AACCCATTTC
GAAACGCTGG CACGCGCCGA AGTACCCTTT GCCCTCGGTA AGCACGCCAC CTCGCGTTAC
TCCCTCGTGC AGCTCAACCC ATTAACCGGC CGGATGCACC AGCTGCGCAA GCACATGGCC
CACATCATGC ACCCCATCAT CGGCGACCGC CCGCACGGGT GCAACAAGCA GAACCGGTTT
TTTAAGGAGG AGCTCGGGAT GATTCAGATG ATGCTGCATG CGGTGTCGGT GGAATTTGTG
CATCCTGTTA GTGGTCAGCA TGTGACTATT GTGGCGCCTT ATTTGTCTGA ATTTGTGAGG
ATGAGAAGTG TGCTTGGTTT GGAGTAA
 
Protein sequence
MQPLEILYRS DDLVAINKPN GLLVHRSPIA SDADVFAVQL LRDQLSQKVY PAHRLDRKTS 
GVLLFALNEN VNSEMQGKFM EGEITKTYHA IVRGHTADRG EIDYPLKRDD GVTQDAVTHF
ETLARAEVPF ALGKHATSRY SLVQLNPLTG RMHQLRKHMA HIMHPIIGDR PHGCNKQNRF
FKEELGMIQM MLHAVSVEFV HPVSGQHVTI VAPYLSEFVR MRSVLGLE