Gene DehaBAV1_1296 details

Gene Information

• Locus tag: DehaBAV1_1296
• Symbol: smpB
• ID: 5132293
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. BAV1
• Kingdom: Bacteria
• Replicon accession: NC_009455
• Strand: +
• Start bp: 1266227
• End bp: 1266775
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640530230
• Product: SsrA-binding protein
• Protein accession: YP_001214753
• Protein GI: 147669935
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000000870079
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGGGG ATACTCTCTG TCAAGCGCCA ATGCATTATG CCCGGATTGT AAGCAATCTG 
CGTCTGGGGT ATGATATAAT ACATATGGCA GAATACGTAA CCCTGACAAC TAACCGCAAG 
GCATTTCACA ACTATTTCCT GGAAGAAAAA TACGAAGCCG GGATAATGCT GCTGGGCACG 
GAGATAAAAT CCCTCCGAAG CGGCAGAGTA AACATGGGAG ATGCCTATGT AAAGCCCCAG 
AGGGGTGAAC TCTGGCTGGT AAATGCCCAT ATTTCAGCCT ACGAGTGCAG CGGACATACC 
AGCCATGAAC CAATGCGGGA ACGCAAACTG CTGATGCACC GCAAGGAAAT AGTCCTGCTC 
ATGTCAAAGG TCAAAGAAAA AGGGCTGACA CTGATACCGG TTCGTATTTA CCTAAAAAAC 
GATATCGCCA AGGTAGAGCT GTCACTGGGG CGGGGTAAGA AGCTCTATGA CAAAAGGGAT 
ACCGTAACCA AGCGGGACAC CGAACGCGAA CTTGAGCGGG AGGTCAAATA CCGCAATTTC 
CGCCGCTAG 

 

Protein sequence

MTGDTLCQAP MHYARIVSNL RLGYDIIHMA EYVTLTTNRK AFHNYFLEEK YEAGIMLLGT 
EIKSLRSGRV NMGDAYVKPQ RGELWLVNAH ISAYECSGHT SHEPMRERKL LMHRKEIVLL 
MSKVKEKGLT LIPVRIYLKN DIAKVELSLG RGKKLYDKRD TVTKRDTERE LEREVKYRNF 
RR