Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_1110 |
Symbol | |
ID | 5131066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | - |
Start bp | 1100316 |
End bp | 1101722 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640530035 |
Product | general substrate transporter |
Protein accession | YP_001214568 |
Protein GI | 147669750 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGCAAA CATCTAGCCC CCCCACTCCC AAAGGCATAT GGAAGGTAAT ATTTGCCTCC TCTGCCGGGA CGGTTATAGA ATGGTACGAC TTTTACATCT TCGGTGCTTT GGCTACTACT CTAGCCAGCA AGTTCTATAA TACCGGCACT CCCATTGGCG ATATTATCGC TTGGCTGGGC ACGTTTGCCG TCGGTTTTCT GGTTCGCCCG TTCGGTGCTA TAGTTTTCGG CCGGATAGGT GATCTGGTTG GCCGCAAATT TACTTATCTT ATTACTATTA CCATCATGGG CTCATGCACC TTCCTCATCG GTTTGTTACC CACCCAGGAC GTGCTGGGCG CCTGGGCCGG CATTATCCTT ATAACAATGC GTATTCTTCA GGGTCTGGCT TTGGGTGGCC AGTACGGCGG CGCGGCTACA TTTGTGGCTG AGCATGCTCC TCAGGGGAAA CGCGGTTTCT ATACCAGCTG GATTCAGACT ACAGCAACCT TTGGTTTGCT TATTTCTCTG GGTGTCATCT TAATCACCCG TATAAGTCTG GGAGAAGCAG ACTTCAACGA ATGGGGCTGG CGTCTGCCTT TCATGGCTTC CATATTGCTG GTAATCCTGT CACTCTGGAT ACGCAGAGCC TTAAAGGAAT CACCTCTGTT CCAGCAACTC AAGGATACCA AGGCTGTTTC AAAAAACCCG CTCAAGGAAA GCTTTGCCAA TCCTTATAAC CTGCGCTGGG TTTTAATAGC CCTGTTCGGG GCTACCATGG GTCAGGGTGT GGTCTGGTAC ACAGGTCAGT TCTATGCCCT GTTCTATCTC CAAAAAATCT TTAACACCCC GCTAATTGAT TCTAATCTTA TAGTCGGTGC AGCTTTGCTA CTGTCAATGC CTTTCTTTAT CTTCTTCGGG TCTCTTTCAG ACCGAATAGG ACGAAAAAAG GTAATGCTTT CCGGTATGCT GCTGGCAGTG CTGACTTACT ATCCGATTTA TGGTCTGATG GCGGCATTTG CGCCTACTGA CCCCGGACAG CACTTCCTGT TTGCTTATAT AGGCTACAAT CCTGTTATAC TGGGTCTCTT GGTATTTATC CAGGTGATTT ATGTAACCAT GGTCTACGGG CCTATTGCCG CCTTCCTAGT GGAGTTATTC CCCACCAAGA TACGTTACAC ATCCATGTCT CTCCCTTACC ATATAGGTAA CGGTGTCTTC GGTGGTTTAG TGCCTATGAT AGGCTTGATA CTTATCAATG CCACAGGCAA TGACTTCGCC GGACTGTGGT GGCCTATGGC TATTGCAGGC ATCTGTTTGG TAGTGGGTTT CCTGCTTATT AAGGAGACCA ACAAGGTGGA TATATCTGAC GCTTCCACTT CAATCTCGGT TAAACACGAG GCTGATAAAC GGGCATTGAA TAAATAA
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Protein sequence | MMQTSSPPTP KGIWKVIFAS SAGTVIEWYD FYIFGALATT LASKFYNTGT PIGDIIAWLG TFAVGFLVRP FGAIVFGRIG DLVGRKFTYL ITITIMGSCT FLIGLLPTQD VLGAWAGIIL ITMRILQGLA LGGQYGGAAT FVAEHAPQGK RGFYTSWIQT TATFGLLISL GVILITRISL GEADFNEWGW RLPFMASILL VILSLWIRRA LKESPLFQQL KDTKAVSKNP LKESFANPYN LRWVLIALFG ATMGQGVVWY TGQFYALFYL QKIFNTPLID SNLIVGAALL LSMPFFIFFG SLSDRIGRKK VMLSGMLLAV LTYYPIYGLM AAFAPTDPGQ HFLFAYIGYN PVILGLLVFI QVIYVTMVYG PIAAFLVELF PTKIRYTSMS LPYHIGNGVF GGLVPMIGLI LINATGNDFA GLWWPMAIAG ICLVVGFLLI KETNKVDISD ASTSISVKHE ADKRALNK
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