| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0744 |
|---|
| Symbol | |
|---|
| ID | 5131701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 731593 |
|---|
| End bp | 733194 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640529660 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_001214206 |
|---|
| Protein GI | 147669388 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000140291 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGTAA AACTATACGA TACTACTTTA AGAGACGGTT CCCAGCGGGA GGGCATTTCC
TTCACGGTGG CGGACAAGCT TAAGATTGCC CAAAAACTGG ATGATCTGGG CATACATTAT
ATTGAAGGCG GCTGGCCGGG TGCAAACCCA AAGGACAGCG AATTTTTCAC TCAGGCAAAA
TCACTCAAAT TGAAAAATGC CAAAATGGTG GCTTTCGGGT CCACCCGCCG CCCAAAAGTA
AAGGCAGATG CAGATACCAC CCTGAAACAA CTGATTGATT CAGGTACGGA ATATGTGACT
TTAGTAGGTA AAAGTTCGGC CAGACAGGTA ACACAGGTAC TGGAAACCAC TCTGGAAGAA
AATCTGGCCA TGATTACCGA ATCTATTGAG TACCTGCGTT CCAAATGCAT AAAGGTCTTT
CTGGATGCCG AGCATTTCTT TGACGGCTAT AAGGATAACC CCGAGTATTC AATACAAGTT
TTACAGGCGG CAGAAAAGGC CGGTGCCGAA GGTGTGGTAC TGTGCGATAC CAATGGAGGT
ACTCTGCCAG AAGAAATAAC CCAAGCCGTC AAAACCGTAA AAGAAGCCCT AAATATTTGC
GTGGGTATTC ACGCCCACAA TGACACCGAA ATGGCCGTAG CTAACAGCAT AGCCGCTCTC
AAGGCTGGTG CCAGTCAGGT TCAGGGCACC ATAAACGGAT TTGGTGAAAG ATGCGGGAAT
GCCAATTTGT GTTCCATAAT ACCCATTTTG AAACTGAAGA TGGATATAGA CTGTATATCT
GATAACCAGC TGAAATTGCT TACTGAAACT TCCCATTATA TAAGTGAACT GGCCAATCTG
GTTTCCGAGC CGTTCTTGCC GTATGTAGGT TCAAGTGCTT TTTCACATAA AGCCGGCCTG
CATGTCAGCG GTCTCAGCAA ATGGTCAGGC AGTTACCAGC ATATAGAACC GGAACTGGTG
GGTAACCATC AACGCCTGCT GGTATCTGAA CTGGCAGGTA GATCAAACAT TGTACAAAGG
GCAAAAGCTA TCGGCATAAA TCTGGCTCCA GATTCCAAAG AAGTAAAAGA CTTGCTTCAG
CAGGTTAAAA AAATGGAGAG CTTGGGTTTT CAGTACGAAA ACGCAGAAGC TTCTTTTGAT
TTGCTGGTAA ACCGCACCCA AACGGGATAT ATTGCCCCGT TTGAGCTTAT AGACTTCATG
GTGGTAGTGG AAAAGCAGCG ACGCCCTTCA ACTATGCGCA ATCAGGACGA AATGATGGCC
GAAGGTATTG TGAAAGTAAG AGTAGACGGC GATATTATGC ACACGGTAGC CGAAGGCAAC
GGCCCTATAA ATGCACTTGA TGCCGCTTTG CGTAAAGGTC TTTGCCAGTT TTACCCTGAA
CTCTCGGCAG TCCATCTATC AGATTACAAG GTGCGCATAC TGGAGCAGAC CAGCGGTACA
GATGCGCTGG TAAGGGTGCT TATTGAATCC AGTGACGGTG AAAATACCTG GCACACAGTA
GGTGCCAGCC CCAACATTAT TGAAGCCAGC TGGCTGGCTC TTTCAGATAG TTTTGAGTAC
TGGCTGATAA CCAAAAAGTG TAAAAACTGT AAAAAACAAT AA
|
|---|
| Protein sequence | MQVKLYDTTL RDGSQREGIS FTVADKLKIA QKLDDLGIHY IEGGWPGANP KDSEFFTQAK
SLKLKNAKMV AFGSTRRPKV KADADTTLKQ LIDSGTEYVT LVGKSSARQV TQVLETTLEE
NLAMITESIE YLRSKCIKVF LDAEHFFDGY KDNPEYSIQV LQAAEKAGAE GVVLCDTNGG
TLPEEITQAV KTVKEALNIC VGIHAHNDTE MAVANSIAAL KAGASQVQGT INGFGERCGN
ANLCSIIPIL KLKMDIDCIS DNQLKLLTET SHYISELANL VSEPFLPYVG SSAFSHKAGL
HVSGLSKWSG SYQHIEPELV GNHQRLLVSE LAGRSNIVQR AKAIGINLAP DSKEVKDLLQ
QVKKMESLGF QYENAEASFD LLVNRTQTGY IAPFELIDFM VVVEKQRRPS TMRNQDEMMA
EGIVKVRVDG DIMHTVAEGN GPINALDAAL RKGLCQFYPE LSAVHLSDYK VRILEQTSGT
DALVRVLIES SDGENTWHTV GASPNIIEAS WLALSDSFEY WLITKKCKNC KKQ
|
|---|
| |