Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_0481 |
Symbol | |
ID | 5131788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | + |
Start bp | 468359 |
End bp | 469099 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640529383 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_001213944 |
Protein GI | 147669126 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000089193 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTAATAG AATATGAGGG CACCAGATAT TCGGGTTTTC AGATTCAGGA CAAAGGTGCT ACTATACAGG GAGAGCTGGA AACAGCTATC CGGAAATTAA CAAGTGAACA GACCAGAGTG AGTGGTTCCG GAAGGACAGA TGCCGGGGTA CACGCGGCTT ACCAGGTAGT CAGTTACCTG ACGGAATCTT CACTGGGGTT GGAAAAAATT AAAGGCGGGT TAAATTATTA CCTGCCGCCG GACATAGCCG TAAAAGAAGT CCACTTTGTA GCCGAAAACT TTGATGTGAG ACGCAGGGCT ATCAGCCGTG AGTACTCTTA CCATATATTA AATAGCAAAA CTCGCTCACC GCTTGCCAGA CTTCAGGCCT GGCAGGTGCC TTACAAGCTG GATATAAAGC TTATGGAACA GGCTTTTAAG ATGCTTGAAG GGGAGCATGA CTTTATCGCT TTTGCCTCCG GTCTGGGGCC GGAGATAAAG AAAACTGTCC GCCGGGTTAA TTGGACACGG TTAGATATTG CAGAGGACAG GCTGATATTA CGGATTGAGG CCAATTCCTT TCTTACCCAT CAGGTGAGAA ATACTATTGG AGTACTGGTG GAACTGGGAC GCGGGACTAT TAGCATGGGC GAGTTTGGGG CATTATTTGA GGCTAAAACC CCCGGACTGG CGGGGCCGGC AGCGCCGGCT TGTGGACTGA GCCTCGTTCG GGTAAACTAT AGAGAACCTT TTGGGAGTTA A
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Protein sequence | MVIEYEGTRY SGFQIQDKGA TIQGELETAI RKLTSEQTRV SGSGRTDAGV HAAYQVVSYL TESSLGLEKI KGGLNYYLPP DIAVKEVHFV AENFDVRRRA ISREYSYHIL NSKTRSPLAR LQAWQVPYKL DIKLMEQAFK MLEGEHDFIA FASGLGPEIK KTVRRVNWTR LDIAEDRLIL RIEANSFLTH QVRNTIGVLV ELGRGTISMG EFGALFEAKT PGLAGPAAPA CGLSLVRVNY REPFGS
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