Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_0313 |
Symbol | secD |
ID | 5131470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | - |
Start bp | 320825 |
End bp | 322174 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640529213 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001213777 |
Protein GI | 147668959 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000119854 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAAGGA AAAACGGGCT CGTGTTTTTG GCCATACTGG CCGCCATGAT CCTTGCTTTC ACGATAGTGC TGCCGACGGA CAAAGGCACA CTTCTGGGCA AGGGAATCCT GTTTGGTCTG GACTTAAAGG GAGGCCTGCA CATGGTATAC CAGGCTGACT TGTCCAACGT AGACGAAAGT GATATTGACG GAGTAATGGA CGGCGTGGTT GAGGTTATAT CCAACCGCAT TAACCCATTG GGTGTAACCG AAGCGTTAAT CCAGCGTCAG GGAGATGACC GAATAGTAGT CGAACTGCCG GGTCTGGATA TTACAGACGA ACAAAAAGCC CGTATCGGCC GTACCGCCCT GCTGGAGTTT GGCGAACTGG CGGCTGACGG AGAAGACTAT AAATGGGAAA ACAGTCTGGG CAAATGGAAA CCGGTCACCG CTACTATTGA CGGGGTTGAA TATGCCCTGA CCAGTGCCTA TTTTAAAGAC AGCACTTATG TCAACCGTGA CCAGTACGGA AATATCCTGC TGGTGTTTGA ATGGGACGCC ACCGGTGCTA AATTATCCAA GGAAATAACC ACCCGCCTTT TAAACCAGCA GCTGGGTATT TTTGAAGGTG ACGAAGCTCT TTCCGGTGAT GACGGAGTAC CCATCGCCCC CGTCATAAAT AATGTTATTG AAACCAGCGG CGTTATAGAA GGCCTCAGCT ACAACGAAGC AGATATGCTT TCCAACCAGC TGAATGCCGG CCGCCTACCG GTACCTCTGG AGTCTATATA CGAGCAAACC GTTTCACCCA CTCTGGGTCA AAATTTTGTA GATCTGGCCG TAAAAGCCGG TCTAGTAGGC ATAATTCTGG TTATGATATT TATGATAGCT TTTTACCGCC TTCCCGGCCT GCTGTCCAGC ATAGCTTTAG TGTTCTACGG GGTCATCGTA ATGGCTCTGT TCAAGCTGGT GCCTGTTACC CTTACACTGG CGGGTATAGG CGGTTTTATT GTATCGGCGG GTATGGCGGT AGACGCCAAT ATCCTTATAT TTGCCCGTTT GAAAGAGGAA CTTCTTTCAG GCAAAACTCT GGGAGCAGCA GTCGAAGCCG GGTTTTCACG TGCATGGTCT GCCATCTGGG ACTCAAACGT TACCACTTTT ATAGCCTGCG GCATTCTGTT CTGGGTGGGT GGCACTATTG CGGCCGGTGC ACCGGTTAAG GGCTTTGCCG TAACATTGTT TTTGGGCGTA GCCGTCAGCA TGTTCACCGC CATTTTTGTT ACCCGCACTC TGCTCAGGCT TTTTGTAGGC ACAAAAACAG GCAAAAAGCT AGCCCTATTC ACCACCCAGA CAAGAGGCAA AAATGAATAA
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Protein sequence | MRRKNGLVFL AILAAMILAF TIVLPTDKGT LLGKGILFGL DLKGGLHMVY QADLSNVDES DIDGVMDGVV EVISNRINPL GVTEALIQRQ GDDRIVVELP GLDITDEQKA RIGRTALLEF GELAADGEDY KWENSLGKWK PVTATIDGVE YALTSAYFKD STYVNRDQYG NILLVFEWDA TGAKLSKEIT TRLLNQQLGI FEGDEALSGD DGVPIAPVIN NVIETSGVIE GLSYNEADML SNQLNAGRLP VPLESIYEQT VSPTLGQNFV DLAVKAGLVG IILVMIFMIA FYRLPGLLSS IALVFYGVIV MALFKLVPVT LTLAGIGGFI VSAGMAVDAN ILIFARLKEE LLSGKTLGAA VEAGFSRAWS AIWDSNVTTF IACGILFWVG GTIAAGAPVK GFAVTLFLGV AVSMFTAIFV TRTLLRLFVG TKTGKKLALF TTQTRGKNE
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