| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0310 |
|---|
| Symbol | |
|---|
| ID | 5131742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 317970 |
|---|
| End bp | 318995 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640529210 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_001213774 |
|---|
| Protein GI | 147668956 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTGG GGCTGGTTTA TAACCATATA TATTTAAATC ATGATACAGG TACCCATGTG
GAAAATCCTG ACCGTTTATT GGCGATTATG GAATATCTGG AGACGCATGG CCTAAAAGAC
CGTTTGGTGC ATGTTGAGCC AAAGCGGGTG GGTATGCGTG AGCTGGAGAG TTTTCATAAA
CGCAGTTATA TAAGCCGGGT TGAGGAAGTG GGTTTCAGCG GGGGCGGCTG GCTGGATCAG
GATACGGTTA TTTCGTTGGA TAGCTACGAA GCCGCTCTAT ATGCCGTGGG CGGGGTGATT
GAGGGAGTGG ATAAGGTACT TTCAAGAGAA CTTGATAGCG TCTTTGTGCT GTGCCGCCCG
CCGGGTCACC ATGCCTTGCC TGAGGCTTCC ATGGGTTTCT GCGTTTTTAA CAATGTGGCT
TTAGGAGCCT TGCATGCCCT GAACAAGCAT AAACTTAAGC GGGTAGCGGT GGTGGATTTT
GATGTTCACC ATGGCAATGG CATCCAGCAT GTCTGTCTGA ATGACCCCCG TCTAATTTAT
CTTTCTCTCC ATCAGATTCA TCATTTTCCT TTTACGGGAG ACAGCCGGGA AAATGGTCCG
TTTCAAAATA TTTTAAATAT CCCCTTGCCT GCGGGCTGCG GAGATAGCCA TTATCAAAAG
GCATTTGACG AGGTGATTGG TCCGTACCTT CGGAAATTTG CACCCGAACT GATACTGGTA
TGCGCCGGAT ATGATGCCCA TTTTGCCGAT GATATGGGCG AGATGTGTCT TTCCCAGCAG
GGCTTTGCCG GTATAACCCG TGCCATAAAG CACGCGGCGG AGGAAGTTTG CGGGGGGAAA
CTGGTATTCA GTTTGGAGGG GGGTTACCAC TACCTTGGTC TGGCCGAAGG AGTGGGGGCT
ACTCTGGCGG TTTTGTTAAA TGAAGCATTG CCTCCCCCAA ATACCAAAGC CCCCGAAGGG
GCTGTGGGTA ATCCTGATAT TGACCTGATG ATTAATGATT TACGGCATAT TAACGGTATC
AGGTAG
|
|---|
| Protein sequence | MAVGLVYNHI YLNHDTGTHV ENPDRLLAIM EYLETHGLKD RLVHVEPKRV GMRELESFHK
RSYISRVEEV GFSGGGWLDQ DTVISLDSYE AALYAVGGVI EGVDKVLSRE LDSVFVLCRP
PGHHALPEAS MGFCVFNNVA LGALHALNKH KLKRVAVVDF DVHHGNGIQH VCLNDPRLIY
LSLHQIHHFP FTGDSRENGP FQNILNIPLP AGCGDSHYQK AFDEVIGPYL RKFAPELILV
CAGYDAHFAD DMGEMCLSQQ GFAGITRAIK HAAEEVCGGK LVFSLEGGYH YLGLAEGVGA
TLAVLLNEAL PPPNTKAPEG AVGNPDIDLM INDLRHINGI R
|
|---|
| |