Gene DehaBAV1_0054 details

Gene Information

• Locus tag: DehaBAV1_0054
• Symbol: ispF
• ID: 5131815
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. BAV1
• Kingdom: Bacteria
• Replicon accession: NC_009455
• Strand: +
• Start bp: 55488
• End bp: 55961
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640528957
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_001213524
• Protein GI: 147668706
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTATTG GAAACGGTTA TGATGTCCAT CGTCTGGCAC CGGGGCAGAA ACTGGTGCTG 
GGCGGGGTGG AAATCCCCTT TGAATGCGGG CTTATCGGCT GGAGTGATGC AGATGTGCTT 
ACCCATGCCA TTATGGATTC GCTTCTGGGA GCGGCGGCAC TGGGGGATAT AGGACTCTAC 
TTCCCGCCGG GAGACCCAAA GTACAAAGGC ATATCTTCAC TCAAACTTCT TGAACAGGTG 
ACAGACTTGC TGGCTAAAAA AGGTTTTGGC ATAATAAATG TAGATTCAGT TATAGTAGCG 
GAGGAACCAA AGCTACGCGG CCATATAGAT ACCATGCGCA AATACCTTGC CAAGGCCATG 
GGCATAGACC CCGGGCGGGT GGGGATTAAA GCCAGCACCT CGGAGCAACT CGGCTTTGTC 
GGCCGGCAGG AGGGAATGGT AGCTTGGGCG GTGGCTCTCG TAGATGAAAA ATAG 

 

Protein sequence

MRIGNGYDVH RLAPGQKLVL GGVEIPFECG LIGWSDADVL THAIMDSLLG AAALGDIGLY 
FPPGDPKYKG ISSLKLLEQV TDLLAKKGFG IINVDSVIVA EEPKLRGHID TMRKYLAKAM 
GIDPGRVGIK ASTSEQLGFV GRQEGMVAWA VALVDEK