| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0053 |
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| Symbol | ispD |
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| ID | 5131809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | + |
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| Start bp | 54799 |
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| End bp | 55482 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640528956 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001213523 |
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| Protein GI | 147668705 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.877831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTTTGA ATGAAAAAGT AGGGGCAGTT ATTGTAGCTG CCGGTCAGAG CCGCCGAATG
GAGGGGCAGG ACAAGATTTT TGCCCTTCTG GCGGGTAAAC CTGTTTTGGC TCACACGCTT
TCGGTTTTTC AAGAATCCCC GCAGGTAGAT GATATTGCTC TGGTTATGGC AGAACACAAT
ATTGAAAAAG CCAAAGAGCT GGTTAAGGAA TATAATTTCA GCAAGGTTAT AGCCATTTGC
TCCGGCGGGA CACTCCGCCA GGACTCTGTC CGCTCAGGGC TGTCAGCCCT GTGTGACTGT
GGCTGGATAC TTATTCATGA CGGGGCGCGC CCTCTGCTTG AGCCTGACTC TATACCCGAA
GGGTTGGAAG CGGCTAAACT CTGCGGTTCG GCCATCGCGG CAGTGCCGCT CAAAGATACC
ATTAAAGAAA TATCCCCGGA AGGGCTGGTG GAAAAAACCC TGCCCAGAGA GAGGCTGATA
TCCGTCCAGA CACCTCAGGT GTTTCGGGCA GATATTATCC AAAAAGCCTA CCAGCGGGTG
GGTATAATCG CCACTGACGA TGCCCAACTG GTAGAAAAAC TGAAGCTCCC AGTCAGGATA
TTCTCCGGCG CATGTGCTAA TATAAAGATA ACCACACCTG AAGACCTGCT TATGGCAGAA
ATACTGCTGA AGAAAGGACG GTGA
|
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| Protein sequence | MFLNEKVGAV IVAAGQSRRM EGQDKIFALL AGKPVLAHTL SVFQESPQVD DIALVMAEHN
IEKAKELVKE YNFSKVIAIC SGGTLRQDSV RSGLSALCDC GWILIHDGAR PLLEPDSIPE
GLEAAKLCGS AIAAVPLKDT IKEISPEGLV EKTLPRERLI SVQTPQVFRA DIIQKAYQRV
GIIATDDAQL VEKLKLPVRI FSGACANIKI TTPEDLLMAE ILLKKGR
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