Gene Ddes_1560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_1560 
Symbol 
ID7285258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand
Start bp1875627 
End bp1876535 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content53% 
IMG OID643582370 
Productextracellular solute-binding protein family 3 
Protein accessionYP_002480139 
Protein GI220904827 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000128549 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCTGA AGAAAACCCT TTTGTCCGCT CTGGCGGCCC TGCTTCTTCT TGCCACGGCC 
CACACTGCTC CGCAGGCTGA AGAACTGACC GGAACGCTGA AAAAAATCAA AGAAACCGGC
GTTATCACTG TGGGGCATCG GGAATCCTCC GTGCCATTTT CTTACTATGA CCTGCAACAG
AACGTCATAG GCTACTCACA AGACTACTCC AACAAGATTG TTGACGCCGT AAAAAAACAG
CTCAACATGC CCAACCTGAA AGTGCGCTTT GTACCCATTA CATCGCAAAA CCGCATTCCC
CTTCTCCAGA ACGGCACCTA CGATTTCGAA TGTGGCTCTA CCACCAACAA TGCCGACCGC
CAGCAGCAAG TCGATTTTTC CAACACCCTC TTCATTGTGG GTACCCGCCT GCTGACCCAC
AAGGATTCGG GCATCAAGGA CTTTGACGAC CTCAAGGGCA AAAATGTTGC CGTTACCGCC
GGAACCACCT CGGAAATGCT GCTGAACAAG ATGAATGACG AGAAAAAACT CGGCATCAGC
ATCATCAGCA CCAAGGACCA CGGCGACTCC TTCCGTACCG TGGAATCCGG CCGTGCCGTA
GCCTTTTTCA TTGACGACGC CCTTCTGGCC GGCGAGCGGG CCAAAGCCAA AAAACCCGCC
GAATGGGTTA TCGTAGGAAC TCCGCAAAGC TTTGAAGCTT ACGGCTGCAT GCTGCGCAAA
GGCGATGCCG CTTTCAAAAA ACTGGCTGAC GATGCCATTG CCGAACTGCA ACTGAACGGC
GAAGCTGAAA AGTCCTACAC CCGCTGGTTC AAGCAGCCCA TCCCCCCCAA GGGCATGAAC
ATGGATTTTG ACATGTCCGA CGAAATGAAG ACCCTCTTCA AGGCCCCCAA CGACAAGGCC
CTGAATTAA
 
Protein sequence
MTLKKTLLSA LAALLLLATA HTAPQAEELT GTLKKIKETG VITVGHRESS VPFSYYDLQQ 
NVIGYSQDYS NKIVDAVKKQ LNMPNLKVRF VPITSQNRIP LLQNGTYDFE CGSTTNNADR
QQQVDFSNTL FIVGTRLLTH KDSGIKDFDD LKGKNVAVTA GTTSEMLLNK MNDEKKLGIS
IISTKDHGDS FRTVESGRAV AFFIDDALLA GERAKAKKPA EWVIVGTPQS FEAYGCMLRK
GDAAFKKLAD DAIAELQLNG EAEKSYTRWF KQPIPPKGMN MDFDMSDEMK TLFKAPNDKA
LN