Gene Ddes_1525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_1525 
Symbol 
ID7285223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand- 
Start bp1822224 
End bp1823228 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content55% 
IMG OID643582336 
ProductTRAP dicarboxylate transporter- DctP subunit 
Protein accessionYP_002480105 
Protein GI220904793 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0157029 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTC TTGTTGCGCT TTTTGTCGCC GTGGGTCTGA TCTGTGGGCT TGCTCTCAGC 
ACGGCTCCCA CTGCGGGGGC GGCTACTGTC ATCAAAATGG CCGGTATGAA GCCGGAAGGT 
GAACCGGAAA CCATAGGCAT GCACCTGTTT GGCAAGTATC TGAAAGAACT TTCCAACGGC 
AAATATGAAG TGCAGGTTTT CCCCAACAGC CAGCTTGGCA AGGAAGACGC CTACATTGCC 
GCGACCCGCA AGGGCATTAT TCAGATGTGC GCCACCGGCA CCCAGACCTC GGCGCTGCAT 
CCGGCCATGG CCATGCTTGA AACCCCCATG CTGTTCGACA ATCTTGACCA TGCCCGCCGC 
GCCATGGAAG GCAAGACGTT TGATCTGATC AATGAGGGTT TTACCGAAAA GTCCGGTCTG 
CGTACCCTTA ACGCCTTTCC TTTGGGCTTC CGCCACTTCT ATTCCAAAAA GCCCATCAAG 
GACGTGAAGG ATCTTGAAGG CATGCGCATG CGTGTACCCA ATATTCCCCT GTACACCAAC 
TTTGCCAAGG AATGCGGCAT CAGCGGGCAG CCCATGCCCT TCGCCGAAGT CCCTGGCGCC 
CTTGACCAGG GTGTGATTGA CGGCGGCGAC AGCCCCCTTG CGGACATCGT CAGCCTCAAG 
ATGTACGAAA TCACTCCCGA GATCAGCCTT TCCGGCCATA TCCTGGTCAT CCATTCCCTC 
TACATCAACG ACAAATTCTT CAAGTCCCTG CCTGAACAGG ACCAGAAGTG GATTGAAGAG 
GCCGCCAAAC GTTCCGCCGA TGACGTGTGG GCTATGGTTG CGGACGGCGA TGAAAAGGCC 
AAGGCCACCA TTCTTGCCAA CAAGGGCAAT ATTCATGAGC CGAGCAAGGA ACTTCATGAG 
CATCTGGTGA ATGCCGGCAA GCGCAGCTGG AAGCTTTTTT ACGACACTGT ACCCAATGCC 
CAGGCTATTC TTGATAGCGC CGACAGCTAT CGTGAATCCA AATAA
 
Protein sequence
MKRLVALFVA VGLICGLALS TAPTAGAATV IKMAGMKPEG EPETIGMHLF GKYLKELSNG 
KYEVQVFPNS QLGKEDAYIA ATRKGIIQMC ATGTQTSALH PAMAMLETPM LFDNLDHARR 
AMEGKTFDLI NEGFTEKSGL RTLNAFPLGF RHFYSKKPIK DVKDLEGMRM RVPNIPLYTN 
FAKECGISGQ PMPFAEVPGA LDQGVIDGGD SPLADIVSLK MYEITPEISL SGHILVIHSL 
YINDKFFKSL PEQDQKWIEE AAKRSADDVW AMVADGDEKA KATILANKGN IHEPSKELHE 
HLVNAGKRSW KLFYDTVPNA QAILDSADSY RESK