Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ddes_0309 |
Symbol | |
ID | 7283965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
Kingdom | Bacteria |
Replicon accession | NC_011883 |
Strand | + |
Start bp | 379240 |
End bp | 380835 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643581094 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002478902 |
Protein GI | 220903590 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTCCA TCAGTAATGC CGGTCGCATG CGTCTGACGG GGGCAGTGTT TGTCCTGTCG GTATTCATGC TTTCGGCCTG CTCCCTTGCG CCGCGCTACG AACGGCCTGA AATGGATATG CCCGCCCAGT GGCGCACGGT GGATATGGGC GCCGCCCCGC TGAACACTGA CTGGTGGAAC CGCTTCAATG ATCCGGTGCT TACCGCCCTG GTGGACGAGG CGCTGAAGAA CAACCAGGAT ATTGCCGAAT CCCTTGCCAA GATCGATTCA GCGGCCTCGC AGGTGGGTAT AGCCACTGCG GATCTGCTGC CCTCGGTCAG CGGCTCGGCT TCGTCCATGG CTCAGGGGGC TTCGGAAAAA ACGCCCAACA CCATGCCCTT TGACAAGAGC GGTCTTTCCC GCACCACGGC CACCAATCAG GCCGCGCTCA GCGCCTCGTG GGAGTTGGAC CTCTGGGGCA AGAACCGCAA TAACTACACC ATGCTCAGCG ATGTGCTCAT GAGCACGGTC ATCGGGCATG AGGCCCTGCG TCTTTCGGTG GCAGGGCAGA CGGCCCAGAG CTACTTTGCC CTGCTGGCCC TGGACATGCA GCTGGATACG GCCCGCCGTA CGCTTAAAAC CCGCGAAGAT GCCTTCAGCA TCTACAGCAG CCGTTACAAG CAGGGTGACA TTACCGAGCT TGACTGGCAG CGCGCCCGTG CAGAGGTTGA AATCGCCCGT GCCCAGGTGC ACACCAGCAC CGTGGCCGTG GACAGGGCCG AAGCCGGACT GGCCGTGCTG CTCGGGCGTT CGCCCCGTGA TATTATGGAA CGCGGCATGC CGCGCGGGCA GGCCATCGGC ATGCTGCCGT CGCCCCCCGT GCTGCCTGAA GGTCTGCCTT CCGACCTGCT GCAGCGCAGG CCGGACGTGC GTGCCGCCGA ATTCATGCTC ATGGCCAATA ACGCAAATAT CGGCGTGGCC CGTGCCCAGT TCTTCCCCTC GGTGTCCCTT ACGGGTATGC TGGGTACGGT CAGTGCGGCC GTGGGCAGCC TGTTTACCGG CCCTGCCGGA GCCTGGAGCT ACGGCGTCAC CGGTTCCATG CCCCTGCTGG ATTTCGGCCG CACCTGGTAC AACGTCAAGG ATGCCGAAGC ACGTAAAAAG GCTTCTGTGG CCGTATACCG CAAAACCGTG CAGACGGCGT TTGAAGACAT GCGCACATCG CTGACCGCCC AGCGCGAGGC CGACGCCATC GTGCGCAGCA TGCAGATCCA GGTGGAAAGC CTGCGCCGTG CCACTACCAT TGCCCGTCTG CAGTACGACA ACGGCTATAC GGACTACCTG ACCGTTCTGG ATGCGGAACG CCAGCTTTTT GCTGCCGAAC TGCAACTGGC ATCGGCCCTG CGTGACCGCC TGGACAACGT CGTGAGCGTT TGCATGGCCC TTGGCGGCGG CTGGAACGAC CCCGGCGCCA GCCCGAGCTT TCCCGTGGTC AATACCGAAA AACTGCTGAA TCAGGAAACA AGCGCCGGGG CATCCGGCAA GTCTTCGGGC AAGGCCGCGG CCGAATCCGC GCCTGCCGCG CCTGAGGCCA GACCACAGGG TGGCGTGAGC CTGTAG
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Protein sequence | MSSISNAGRM RLTGAVFVLS VFMLSACSLA PRYERPEMDM PAQWRTVDMG AAPLNTDWWN RFNDPVLTAL VDEALKNNQD IAESLAKIDS AASQVGIATA DLLPSVSGSA SSMAQGASEK TPNTMPFDKS GLSRTTATNQ AALSASWELD LWGKNRNNYT MLSDVLMSTV IGHEALRLSV AGQTAQSYFA LLALDMQLDT ARRTLKTRED AFSIYSSRYK QGDITELDWQ RARAEVEIAR AQVHTSTVAV DRAEAGLAVL LGRSPRDIME RGMPRGQAIG MLPSPPVLPE GLPSDLLQRR PDVRAAEFML MANNANIGVA RAQFFPSVSL TGMLGTVSAA VGSLFTGPAG AWSYGVTGSM PLLDFGRTWY NVKDAEARKK ASVAVYRKTV QTAFEDMRTS LTAQREADAI VRSMQIQVES LRRATTIARL QYDNGYTDYL TVLDAERQLF AAELQLASAL RDRLDNVVSV CMALGGGWND PGASPSFPVV NTEKLLNQET SAGASGKSSG KAAAESAPAA PEARPQGGVS L
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