Gene Dde_2956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2956 
Symbol 
ID3757961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand+ 
Start bp2936881 
End bp2937300 
Gene Length420 bp 
Protein Length139 aa 
Translation table11 
GC content57% 
IMG OID637783857 
Productnickel responsive regulator 
Protein accessionYP_389445 
Protein GI78357996 
COG category[K] Transcription 
COG ID[COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain 
TIGRFAM ID[TIGR02793] nickel-responsive transcriptional regulator NikR 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0649578 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCCAGA CCATCCGATT CGGCGTTTCA CTGGACTCCG ACCTGCTGGA AAAATTCGAC 
GCCCTGTGTG ATGAACGCTG CTATCAGACC CGCTCGGAAG CAATCCGCGA TCTCATCCGC 
AACACGCTTG TCCAGCAGGA ATGGGAAGAT ACCGGACGGG ATATAGCGGG AACCCTGACA 
CTGGTTTTCG ATCATCACAA AAGCGACCTG CAGCAGCGGC TGACAGAAAT ACAGCACGAT 
GAGCACGATC TCATCATCAC CACGCTGCAT GTGCATCTTG ACCATGACAA CTGCCTGGAA 
GTGCTGGTGC TCAAAGGCCC CGCAGAACGC GTGCGCAACC TCGCCCAGAG GCTGACATCC 
ACCCGCGGCG TAAAACACGG CAAACTGAGC CTGACCACCA CCGGACAGGA TCTGGCCTGA
 
Protein sequence
MGQTIRFGVS LDSDLLEKFD ALCDERCYQT RSEAIRDLIR NTLVQQEWED TGRDIAGTLT 
LVFDHHKSDL QQRLTEIQHD EHDLIITTLH VHLDHDNCLE VLVLKGPAER VRNLAQRLTS 
TRGVKHGKLS LTTTGQDLA