| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2392 |
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| Symbol | trmE |
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| ID | 3757408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 2415283 |
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| End bp | 2416689 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637783288 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_388884 |
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| Protein GI | 78357435 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0118764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAGC ATCACGGAAC AGACACCATA GCCGCCGTCG CCACCCCGCT GGGGCAGGGC
GGGGTGGGCA TCATCCGGCT GAGCGGTCCG CGCAGCCATG CCATACTTAC AGCCCTGTTC
GACTCCACAT CGCCCGGTTT CAGCGGTTTC CGACCGCGGG TGCTGCATCA TGGGCACATT
CATGACGGTA CGCCGCAGCG CAGGATTCTG GACGATGTGC TGGCGGTGCA CATGCCTGCA
CCGCGTACGT TTACCGGTGA AGATGTGGTG GAAATCAACT GCCATGGCGG ACCTGCCATT
CTTGCCGCGG TGCTGGATGC GGTGTTGCGT CAGGGCGCAC GGCCCGCGGC GCACGGCGAA
TTTACCCGAC GGGCTTTTCT TAACGGTCGC ATGGACCTGA CGCAGGCTGA GGCTGTGGCC
GAGATGATAG CGGCCCCGGC GGCGGAAGGC GTCCGGCTGG CGCAGGCCCG TCTTGACGGC
ATGCTTGGCA GACACATAAA CGCCCTGCGC GAACGGCTTG AACTGGTACG TGTGCAGTTG
TGTGTGGCGG TCGATTTTCC AGAGGATGAA GTGGAATGTC TTGCCCCGGC CGATTTTATG
CACGCAGTTG AAGAAACTGC GGATGCTATC CGCAAGCTTA TCGGTAACTA CGAGCGGGCC
CGCTGCTGGC GTGAAGGAGC TCAGGTGGTG CTGGCCGGAC AGGTGAATGC CGGCAAATCA
AGTCTGCTTA ATGCCCTGCT GGGCAGAAAG CGGGCCATAG TGACGGACGT TCCCGGCACC
ACACGTGATT TTCTGGAAGA AAGCATTACG CTGGACGGGC TGGCCGTGCG TCTGGTTGAT
ACCGCCGGCC TGCGCGAGAC AGGCGACATC GTGGAGCAGG AAGGTGTGCG CATGAGCCGT
GACCTTGCCG CTCAGGCTGA TCTGGTGCTG CTGGTGGTGG ATTCCCGTTT GGGCACCGGC
CCGCATGAGC AGGAACTTAT GGCCGCCATG GAAGCCGGAT CTGTACTTGT TGTGCTGAAC
AAGACCGATG CCGCGACCGA GGATGAACTG GACAGGTGTG TCCGGTCACT TGCCGGTCGC
CCTCATGTGG CTGTATCTGC CCGTGAAGGA AAGGGGATGG ATTCTCTGGC CGCAGCCGTG
CGCGAGATGG TGCTGCGCCG CAGCAACGCG CTGACCGCAG ATGCTGCCGC ATCGGATATG
GCACCCAACC TGCGCCAGAC GGAAGCCCTG CGGCGCGCGC TTGAAGAGCT GGAAGCGCTG
GCTGCCGATA TCGTTTCGGG AGTGCCGTAT GACCTTGCGG GAGTCCGCCT TGAGTCTGCC
TGCTCCGTTC TTTCAGAAAT CACGGGCGAA ACCACGCCGG ATGATATTCT GAACAGGATT
TTTGATTCGT TCTGCATCGG CAAGTGA
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| Protein sequence | MSQHHGTDTI AAVATPLGQG GVGIIRLSGP RSHAILTALF DSTSPGFSGF RPRVLHHGHI
HDGTPQRRIL DDVLAVHMPA PRTFTGEDVV EINCHGGPAI LAAVLDAVLR QGARPAAHGE
FTRRAFLNGR MDLTQAEAVA EMIAAPAAEG VRLAQARLDG MLGRHINALR ERLELVRVQL
CVAVDFPEDE VECLAPADFM HAVEETADAI RKLIGNYERA RCWREGAQVV LAGQVNAGKS
SLLNALLGRK RAIVTDVPGT TRDFLEESIT LDGLAVRLVD TAGLRETGDI VEQEGVRMSR
DLAAQADLVL LVVDSRLGTG PHEQELMAAM EAGSVLVVLN KTDAATEDEL DRCVRSLAGR
PHVAVSAREG KGMDSLAAAV REMVLRRSNA LTADAAASDM APNLRQTEAL RRALEELEAL
AADIVSGVPY DLAGVRLESA CSVLSEITGE TTPDDILNRI FDSFCIGK
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