Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_1978 |
Symbol | |
ID | 3756984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 2024103 |
End bp | 2025350 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637782864 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_388470 |
Protein GI | 78357021 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00280212 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATCATT TCACATACCG CGACAATGAA CTCTTTGTGG AAAATGTAGC TGTTCAGGAA CTTGTGGCCA CATACGGAAC TCCTTTGTAC ATATACTCCA AAGCGACTTT TCAGCGCCAT TTCACAGCGT TTGATTCAGC ATTCGGTGCG CTGCCCCACC TCACCTGCTA TTCGGTGAAA GCATGCTCCA ACATGCACAT TCTGCGCTTT CTCGGCAAAA TGGGCGCAGG CATGGACATT GTATCGGGCG GGGAGCTTTT CAGAGCGTTG CGGGCAGGTA TTCAGCCAGC CAAAATCGTT TACAGCGGAG TAGGAAAAAC ACGCACTGAA ATTCTGCAGG CACTGGAAGC TGGCATCCTG ATGTTCAATG TGGAATCCAT GGGAGAGCTG GAAAAAATAA GCGAAGTGGC CAACCAGACG GGTCACACAG CCAACGTAGC TCTGCGCATC AACCCCGATG TGGACCCGCA TACCCACCCG TACATATCCA CCGGACTGAA AGAAAACAAA TTCGGTCTGG ACATGGAACA GTCCTATGCG GCTTATATGC GTGCCATGGA ACTGCCCGCC ATCACACCCA TGGGTATTGA TTGCCATATA GGTTCACAGC TGACCAGTCT GTCACCATTC AGAGAAGCTG TCGAAAAGAT ACTTCTTTTC CGGGAAAAGC TGTGCTCTGC AGGACTGTGC ATTGACTACA TAGATCTGGG CGGAGGACTG GGAATACCGT ATGACACCGA AGAACCGCCT CATCCGCAGG AATTCGGCAA GCTGCTTACT GATATGCTTT CGGGACTTGG CATCACATTG ATACTGGAAC CCGGAAGGGT CATTGCAGGC AACGCGGGCA TTCTGGTCAC CAAAGTCCAG TACACCAAAA AAACCGCTAC CAAAGAATTT GTCATTGTCG ATGCCGCCAT GAACGATCTT ATCAGACCTT CTCTGTACCA GTCACACCAT CATATTGCCG AAGTCAGCCC CAGAGGCAGG GCAAAACACA CGGTGGATGT TGTGGGCCCC ATCTGTGAAT CGGGCGATTT TCTGGCACGC GACAGGCTCA TGCCTGCGGT GGAACCGCGC GAACTGCTGG CGGTGTTCTC CGCCGGAGCA TACGGGTTCA CCATGAGCTC GCAGTATAAC TCGCGGCCTC GTGCCGCTGA AGTTCTGGTG CGGGGTGATA CTGCTCACCT CATCAGGCGC AGAGAGACCT ATGAGGACCT CATTGCGCCT GAAGAAACAC GTTCTTAA
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Protein sequence | MHHFTYRDNE LFVENVAVQE LVATYGTPLY IYSKATFQRH FTAFDSAFGA LPHLTCYSVK ACSNMHILRF LGKMGAGMDI VSGGELFRAL RAGIQPAKIV YSGVGKTRTE ILQALEAGIL MFNVESMGEL EKISEVANQT GHTANVALRI NPDVDPHTHP YISTGLKENK FGLDMEQSYA AYMRAMELPA ITPMGIDCHI GSQLTSLSPF REAVEKILLF REKLCSAGLC IDYIDLGGGL GIPYDTEEPP HPQEFGKLLT DMLSGLGITL ILEPGRVIAG NAGILVTKVQ YTKKTATKEF VIVDAAMNDL IRPSLYQSHH HIAEVSPRGR AKHTVDVVGP ICESGDFLAR DRLMPAVEPR ELLAVFSAGA YGFTMSSQYN SRPRAAEVLV RGDTAHLIRR RETYEDLIAP EETRS
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