| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1976 |
|---|
| Symbol | |
|---|
| ID | 3756982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2020900 |
|---|
| End bp | 2023614 |
|---|
| Gene Length | 2715 bp |
|---|
| Protein Length | 904 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637782862 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_388468 |
|---|
| Protein GI | 78357019 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0020973 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAGCC ATTCTCCAAA GCTGACCCCG ATGTTCGAAC AATACATGAA CATCAAGGCC
GAGTATCCTG ACGCCCTGCT CTTTTACCGT ATGGGCGACT TTTACGAGCT GTTCTTTGAG
GACGCGGAAG TCGCTGCCCG CGAGCTGCAG ATAGCCCTGA CATGCCGCAA CCCCAATGCC
GAAAACAAAG TGCCCATGTG CGGTGTGCCC CATCACTCCG CACGCAGCTA CATCAGCCAG
CTGGTGGATA AAGGCTACAA AGTCGCCATC TGCGAACAGA TGGAAGACCC GCGAGAAGCC
AAGGGGCTGG TGAAGCGGGG AGTCATAAGA GTTTTGACCT CCGGCACTGC GCTGGAGGAC
GAAAACCTTT CCCCCAAGGC TCACACCTAT CTCGGGGCAT TGTGCTGGGA CAAGTCGGAA
GGAGCCGGCG GATTTGCATG GGTGGACTTT TCCACAGGCG AGTGGTCCGG ACTGCAAAGC
CGGAAAGAAC AGGAACTCTG GCAATGGGTT CAGAAAATGG CGCCCCGCGA ATTGCTGCTG
GCCGACACGC TGACACCGCC TGCATCGCTG GAACTGACCG AAACCCAGTT CAGCAAAGTG
CCGGAACGCG CTTATTTTGA TTACAAACGC TCGGCGGAAA AGATCATGTC TGCCCAGCAG
GTTGCCGAAC TCGGCGCACT GGGGCTGGAA AACCGCAAAG AGCTCGTCCG GGCCTGCGGG
GCGCTGCTCA CATATCTTTC CCAGACACAG AAGCAGGACC TTAACCACCT TTGCCAGTTC
AAGCCGCTGA ACCTGAACCG ACATCTGCTG CTTGACGAAA TAACCGAGAG GAATCTCGAG
CTTTTCAGAC GGCTGGACGG TCGCAAGGGC AAAGGCACCC TGTGGCATGT TCTGGACCAT
ACGGTCACCC CCATGGGCGG AAGACTGCTG CAGGAACGCC TGAAACACCC GTGGCGCGAA
CAGGCCCCCA TTGACGAAAC GCAGGAAGCC GTTTCGCACT TTTTTGCCCA CAACACACTG
CGCAGACAGC TCAGAGAAGC ACTTGATACG GTTTATGACA TCGAGCGGCT GAGCACCCGG
ATTTTTCTGA ACCGGGCAAC CCCAAGGGAT TACGTGGCGC TGCGGCAGAG CCTGAAAGCA
CTGCCGGCAG TAAGAGAACT GCTGGAGGCC CCGCAGACAG GAGACGGCAG ATACGCCACT
CCGGAAGAAC AGCTGGGGGC CGCCCTGCCG CCCTTTCTGC ACAGAATGCT CAAAAGCTGG
GATGACCTTG CCGACTACCA CGATCTTCTG GAAAAAGCGC TGGTAGACAA CCCGCCCCAC
GTCATCACGG AAGGCGGACT GTTCCGTCAG GGATTCCACC CTGCTCTGGA CGAGCTGATG
GATCTCTCCG AACACGGAGC CTCGAAATTG CATGACCTGC TTGCAGAGGT ACAGCAGACC
ACAGGCATCA GCAAAATAAA ACTCGGCAAT AACAGAGTGT TCGGTTATTA TTTTGAAGTA
CCGAAGTCTG TTTCGGAAGA ACTGCCCGAC ACCTTTGTTC GCCGTCAGAC GCTGGCCAAC
GCCGAACGGT ATACATCAGA GCGCCTCAAG GAGCTGGAAG AAAAGCTGTT TTCAGCAGCC
GACAAGCGCA AGACCATGGA ACTGAAGCTG TTTCAGCAAC TGCGCGAGCA TGTGGCCCAA
GCCCGACCGA GAGTGCTTTT CATGGCGGAT CTGCTGGCCA CCCTTGACCA CTGGCAGGGA
CTGGCGGAAG CCGCCCGGCA CTGGAACTGG GTGCGCCCGG TTCTGCATGA CGGGCAGGAT
ATTGTCATCC GCGAAGGACG CCATCCTGTG GTGGAAGCCG TACAGGGACC TGCGGGATTC
ATCCCCAACG ATCTGCGCAT AGATGACCAG CGCCGCCTGC TGCTGATTAC CGGCCCCAAC
ATGGCCGGCA AGTCCACAGT CCTGAGACAG GCTGCGATTA TCTGCATTCT TGCCCAGATA
GGTTCTTTTG TTCCTGCACG GGAGGCGCGC ATAGGGCTGT GCGACCGTAT TTTTTCGCGT
GTGGGGGCTT CGGACAATCT GGCGCAGGGG CAGTCCACAT TCATGGTTGA AATGATGGAG
ACAGCCCGTA TTCTGCGGCA GGCCACCAGG CGCAGTCTGG TCATACTTGA TGAAATCGGC
CGCGGCACAT CAACCTTTGA CGGACTGGCT CTGGCGTGGG CTGTAGTTGA AGAACTTATG
AAAAAACAGC AGGCCGGCAT ACGCACGCTG TTTGCCACCC ATTACCACGA GCTGACGTCG
CTGGAGGGAA CCATTCCCGG CGTGCACAAC ATGAACATCG CCATAAAGGA ATGGGGAGGC
GAGATTGTCT TTCTGCGCCG GCTGGTGCCC GGTCCTTCCG ACCGCAGCTA TGGTGTAGAG
GTGGCAAAGC TGGCCGGAGT ACCGCAAAAC GTGGTGCAAC GTGCCCGACA GATTCTGGAG
TTGCTGGAGC AGAAAAGCAA AGCTGACGGA ACCAGACGCC CGGCATCATA CCACGAAGCC
CAGCCGCTGC TGCCGGGTAT GCCCGAACCG CCATCAACAG CAAGTGCAGA ACCACCTCAG
ACCGTCACGC CGCCTGAGCC TCCCGTGCTT ACCGCCCTGC GTGACCTTGA CACGGACAAC
CTGACACCAC TGGAAGCCCT TACCGTCCTG ACGGAATGGA AAACTTTATG GGGAGCCGGA
AAAAATGAAT GCTGA
|
|---|
| Protein sequence | MTSHSPKLTP MFEQYMNIKA EYPDALLFYR MGDFYELFFE DAEVAARELQ IALTCRNPNA
ENKVPMCGVP HHSARSYISQ LVDKGYKVAI CEQMEDPREA KGLVKRGVIR VLTSGTALED
ENLSPKAHTY LGALCWDKSE GAGGFAWVDF STGEWSGLQS RKEQELWQWV QKMAPRELLL
ADTLTPPASL ELTETQFSKV PERAYFDYKR SAEKIMSAQQ VAELGALGLE NRKELVRACG
ALLTYLSQTQ KQDLNHLCQF KPLNLNRHLL LDEITERNLE LFRRLDGRKG KGTLWHVLDH
TVTPMGGRLL QERLKHPWRE QAPIDETQEA VSHFFAHNTL RRQLREALDT VYDIERLSTR
IFLNRATPRD YVALRQSLKA LPAVRELLEA PQTGDGRYAT PEEQLGAALP PFLHRMLKSW
DDLADYHDLL EKALVDNPPH VITEGGLFRQ GFHPALDELM DLSEHGASKL HDLLAEVQQT
TGISKIKLGN NRVFGYYFEV PKSVSEELPD TFVRRQTLAN AERYTSERLK ELEEKLFSAA
DKRKTMELKL FQQLREHVAQ ARPRVLFMAD LLATLDHWQG LAEAARHWNW VRPVLHDGQD
IVIREGRHPV VEAVQGPAGF IPNDLRIDDQ RRLLLITGPN MAGKSTVLRQ AAIICILAQI
GSFVPAREAR IGLCDRIFSR VGASDNLAQG QSTFMVEMME TARILRQATR RSLVILDEIG
RGTSTFDGLA LAWAVVEELM KKQQAGIRTL FATHYHELTS LEGTIPGVHN MNIAIKEWGG
EIVFLRRLVP GPSDRSYGVE VAKLAGVPQN VVQRARQILE LLEQKSKADG TRRPASYHEA
QPLLPGMPEP PSTASAEPPQ TVTPPEPPVL TALRDLDTDN LTPLEALTVL TEWKTLWGAG
KNEC
|
|---|
| |