| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1892 |
|---|
| Symbol | |
|---|
| ID | 3756895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 1944173 |
|---|
| End bp | 1944751 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637782776 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_388384 |
|---|
| Protein GI | 78356935 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000000800916 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATGCGA TTCTTGCTGC AGCTGCTCAG GTTTTCGAAG CTCACGGCTA TGCGGCCGGC
ACCACCAACC GGATTGCGAT AAAAGCCGGG GTCTCCATCG GAACCTTGTA TCAATATTTT
TCAAGCAAGG AGGCGATCGC CGTGGCCCTG CTCGAGCAGC ACATCGCCGA TACCGGCCAT
CGTCTGCACG AGTGGGTCGG CCACATGGTG GTGGAGCAGC ACAGTCTCAG TGAGGCCCTG
AACGATTATG TAACCGATAT GTTGGAGATG CATTCCCGAC AACCGCGGCT GCAGCACATA
TTGCTTGAAG AAACGCCAAT TCCTGAGCGC GTCCACCAGG CTTTGCTCGA ATCCGAACGG
CAAGCGGCCA AAACGGTGGC CGGCCTTCTG CGCCTGTATC CCGAGGTTCG ACAAAGCGGT
TTGGAGCATA CTTGTTTCGT TGTTGTGCAG AGCGTCGAAA GCCTGACCCA TCGGTTCGCA
GCTCACCCGG ACGATGAATT CATCCCCCGG GCCACTTTCG TAAATGAAGT GGTCACGATG
TTGCTGGCGT ATTTAACGTG TGAGGCACGT CATGAATGA
|
|---|
| Protein sequence | MDAILAAAAQ VFEAHGYAAG TTNRIAIKAG VSIGTLYQYF SSKEAIAVAL LEQHIADTGH
RLHEWVGHMV VEQHSLSEAL NDYVTDMLEM HSRQPRLQHI LLEETPIPER VHQALLESER
QAAKTVAGLL RLYPEVRQSG LEHTCFVVVQ SVESLTHRFA AHPDDEFIPR ATFVNEVVTM
LLAYLTCEAR HE
|
|---|
| |