Gene Dde_1708 details

Gene Information

• Locus tag: Dde_1708
• Symbol: rnc
• ID: 3756706
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. G20
• Kingdom: Bacteria
• Replicon accession: NC_007519
• Strand: +
• Start bp: 1765073
• End bp: 1765762
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637782588
• Product: ribonuclease III
• Protein accession: YP_388200
• Protein GI: 78356751
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.0152797
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGAAA AATTGCAGGA TGTGCTGTGT TACCGTTTTG CAGATGTACG TCTGCTGGAA 
ACGGCGCTGA CGCATAGTTC CTACGCTAAC GAGCGCGGTA CGGAGATAGA GCATAACGAA 
CGGCTGGAAT ATCTGGGCGA TGCAGTTCTG GAACTGACAG TTTCCGAGCA GCTGTTCACA 
CGCTTTCCCG AAGCCAGAGA AGGGCAGCTG ACCCGCATGC GGGCACGGCT GGTGAGCAAG 
CCTTCGCTGG CCGAACTGGC ACGTGAGCTG AAGCTGGATA CCTATCTGCT GTTGGGCAAA 
GGTGAAGAAA GTCAGGGGGG CAGAACCCGC AGCTCTGTAC TCAGCGATGC CTTTGAGGCG 
ATCCTCGGGG CGATTTTTCT GGACGGCGGC TATGCCGCGG CCGGCAAGAC GGTGCTGCAT 
GTTTTCAGCT CGCGCTGGCC GCAGGGGGCC GAGGCAGCCC GCACCAAAGA TGCCAAAAGC 
ACATTGCAGG AGCTTACCCA GCGTCTGTTT AAGGAACGGC CGGTGTATAC GCTGCTTGGC 
AGCAGCGGGC CGGAGCATGA AAAAATTTTT AAGGTCAGGC TGCTGCTGCC GGACGGCAGA 
GCGCTGGAAA CAGAAGGGCA AAGCGTCAAA AGAGCCGAGC AGAAGGCTGC CGGACTTGCT 
CTTGAACTGC TGGAAGGCGA AAGCGCCTGA 

 

Protein sequence

MFEKLQDVLC YRFADVRLLE TALTHSSYAN ERGTEIEHNE RLEYLGDAVL ELTVSEQLFT 
RFPEAREGQL TRMRARLVSK PSLAELAREL KLDTYLLLGK GEESQGGRTR SSVLSDAFEA 
ILGAIFLDGG YAAAGKTVLH VFSSRWPQGA EAARTKDAKS TLQELTQRLF KERPVYTLLG 
SSGPEHEKIF KVRLLLPDGR ALETEGQSVK RAEQKAAGLA LELLEGESA