| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3861 |
|---|
| Symbol | |
|---|
| ID | 8087246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 4468978 |
|---|
| End bp | 4470297 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644837952 |
|---|
| Product | glycerol-3-phosphate transporter periplasmic binding protein |
|---|
| Protein accession | YP_002989436 |
|---|
| Protein GI | 242241255 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAGC ACGCTATCCG TAAAACCGCC GCCGTCGTCA TTATGGCGTT GGCCGCCAGC
GCACAGGCGC AGGCCGTTAC CGAAATCCCG TTTTGGCACT CGATGGAAGG GGAACTGGGT
AAAACCGTCA GCTCGCTGGC GGATCGCTTC AACCAGACGC ACAGCGACGT GAAGATTGTC
CCGGTTTACA AAGGCAACTA CGAGCAGAGT CTGGCGGCGG GTATCGCGGC TTATCGTAGC
GGCAATGCGC CGGCCATCCT GCAGGTGTAT GAAGTGGGCA CCGCCACCAT GATGGCCAGC
AAGGCGATCA AGCCGGTGTA TCAGGTCTTC AAAGACGCCG GCGTGCCTTA CGACGAGAAA
ATCTTCGTGC CGACCGTTTC CGGTTACTAT TCCGACTCCA AAACCGGGCA CCTGCTGTCC
CAGCCGTTCA ATAGCTCTAC GCCGGTGCTG TATTACAACA AAGATGCCTT CAAAAAAGCG
GGTCTGGATC CGGAGCAAGC GCCGAAAACC TGGCAGCAGA TGGCCGAGTA CACCGCCAAG
CTGCGTGCTT CCGGCATGAA ATGCGGTTAC GCCAGCGGCT GGCAGGGCTG GATTCAGATT
GAAAACTTCA GCGCCTGGCA CGGTCTGCCG ATCGCCACCA AAAACAACGG GTTCGACGGT
CTTGATGCGG TACTGGAGTT CAACAAGCCG GTTCAGGTCA AACATATCCA GATGCTGGAA
GACATGAACA AGAAGGGTGA TTTCACCTAT TACGGCCGTA AAGACGAACC GACCGAGAAG
TTCTATAACG GCGACTGCGC CATGACCACC GCCTCGTCCG GTTCGCTGGC TAATATCCGG
CAGTACGCCA AATTCAACTA CGGCGTCGCC ATGATGCCGT ATGACGCCGA TGAGAAAGGC
GCGCCGCAGA ACGCCATTAT CGGCGGGGCC AGCCTGTGGG TGATGAACGG TAAAGACGCC
GCTACCTATA AAGGCGTGGC GGAATTTATG CAGTTCCTGT CGACACCGGA AATCGCCGCC
GAGTGGCACC AGAAGACCGG TTATCTGCCG ATCACCACCG CCGCTTACGA ACTGACCAAG
CAGCAGGGTT TCTATGACAA GAACCCCGGC GCCGACATCG CTACCCGTCA GATGCTGAAC
AAAGCGCCGC TGCCGTTCAC CAAAGGGCTG CGTCTGGGCA ATATGCCGCA GATTCGCACC
ATCGTGGATG AAGAGCTGGA AAGCGTCTGG ACCGGCAAAA AGACCCCGCA GCAGGCGCTG
GATGCCGCTG TGGAGCGCGG CAATGTGTTG TTGCGCCGTT TCGAACAAGC GAACAAGTAA
|
|---|
| Protein sequence | MFQHAIRKTA AVVIMALAAS AQAQAVTEIP FWHSMEGELG KTVSSLADRF NQTHSDVKIV
PVYKGNYEQS LAAGIAAYRS GNAPAILQVY EVGTATMMAS KAIKPVYQVF KDAGVPYDEK
IFVPTVSGYY SDSKTGHLLS QPFNSSTPVL YYNKDAFKKA GLDPEQAPKT WQQMAEYTAK
LRASGMKCGY ASGWQGWIQI ENFSAWHGLP IATKNNGFDG LDAVLEFNKP VQVKHIQMLE
DMNKKGDFTY YGRKDEPTEK FYNGDCAMTT ASSGSLANIR QYAKFNYGVA MMPYDADEKG
APQNAIIGGA SLWVMNGKDA ATYKGVAEFM QFLSTPEIAA EWHQKTGYLP ITTAAYELTK
QQGFYDKNPG ADIATRQMLN KAPLPFTKGL RLGNMPQIRT IVDEELESVW TGKKTPQQAL
DAAVERGNVL LRRFEQANK
|
|---|
| |