Gene Dd703_3178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd703_3178 
Symbol 
ID8088475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya dadantii Ech703 
KingdomBacteria 
Replicon accessionNC_012880 
Strand
Start bp3728470 
End bp3729426 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content62% 
IMG OID644837252 
Productcytochrome c nitrite reductase, NrfD subunit 
Protein accessionYP_002988764 
Protein GI242240583 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3301] Formate-dependent nitrite reductase, membrane component 
TIGRFAM ID[TIGR03148] cytochrome c nitrite reductase, NrfD subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.15313 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAACG CCTTCCATTT CAGTTCCCTG GTCTGGGACT GGCCGATTGC CGTCTACTTG 
CTGCTGGTGG GGATCTCATC CGGCATGCTG GTGCTGACGC TGCTGTTCCG TCGCTATCTG
CCCGCGGAGA ACCAGCACGC CAACCCGTTG ATTGCCGCCA CGGCGATCAT CGCGCCGCTG
TCGGTGGTCG TCGGGCTGGT GATCCTGATA TTCCACCTCG CCCGCCCCGT CACCTTCTGG
TACCTGATGG TCTTCTATAA CCCCGGTTCC ATTATGTCGT TGGGAGTGAT GCTGTTTCAG
GTGTACATGC TGGTGCTGTT CCTGTGGCTG GCCAGTCTGT ACCAACAACC GCTGCTGGCC
TGGAGCGCTC GCCATCTGCC GGGCGCCCTG CACGGTTTGC TGAACGGCGT CATTACGCGA
GTGACCCGCG GCATGCGGCC GGTGGAAAAT CTGCTGCTGG TGCTGGCGTT GCTGCTCGGC
TGTTATACCG GTTTCCTGCT CTCGGCGTTG AAATCCTTTC CGCTACTGAA TAACCCGGTG
TTGCCGGTGC TGTTTTTGGT CTCCGGCGTC ACCTCCGGGG TCGCGGTGCT GATGATGGTC
GGCACATCGG CGCGTTGCCG CCGCGCCTGC CCGCAAACGT TGCACCTACT GCATGCGCTG
GAAAAACCGA TCGCGCTGAT CGAACTGTTC CTGCTGTTCG CTTTCTTCAT CGGTTTGCTG
CTGGGCGGCG GCCAGAAGAC GGTAGCGGCG CAGGTGGCGC TGAGCGGCTT CTGGGGCGGC
GTGTTCTGGA TCGGGATTAT CGGCATCGGC ATGCTGGCGC CATTGGCGGC GGGCAGCCTG
CCGGCACGAC GTCGTAGTAG TCCGCACCTG CCGCGGATTG CCGCCGGCCT GACGTTGCTG
GGCGTGTTCC TGTTGCGCCT GTTCGTACTG TACGCCGGGC AGATGACGGT GGCCTGA
 
Protein sequence
MHNAFHFSSL VWDWPIAVYL LLVGISSGML VLTLLFRRYL PAENQHANPL IAATAIIAPL 
SVVVGLVILI FHLARPVTFW YLMVFYNPGS IMSLGVMLFQ VYMLVLFLWL ASLYQQPLLA
WSARHLPGAL HGLLNGVITR VTRGMRPVEN LLLVLALLLG CYTGFLLSAL KSFPLLNNPV
LPVLFLVSGV TSGVAVLMMV GTSARCRRAC PQTLHLLHAL EKPIALIELF LLFAFFIGLL
LGGGQKTVAA QVALSGFWGG VFWIGIIGIG MLAPLAAGSL PARRRSSPHL PRIAAGLTLL
GVFLLRLFVL YAGQMTVA